YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC11E10.09c
Organism:	Schizosaccharomyces pombe
Length:	478 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC11E10.09c.

Description	E-value	Query Range	Subject Range
gi\|6561863 - gi\|6561863\|gb\|AAF17100.1\|AF208224_1 alpha-amylase [Emericella nidulans] gi\|49092156, gi\|... - gi\|67525889\|ref\|XP_661006.1\| hypothetical protein AN3402.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	324.0	[0..15]	[473..21]
gi\|82749184, gi\|... - gi\|82749184\|ref\|ZP_00911649.1\| Alpha amylase, catalytic subdomain [Clostridium beijerincki NCIMB 805...	322.0	[0..14]	[457..1]
gi\|56419238, gi\|... - gi\|56419238\|ref\|YP_146556.1\| alpha-cyclodextrinase [Geobacillus kaustophilus HTA426], gi\|56379080\|db...	322.0	[0..13]	[473..126]
gi\|22129791 - gi\|22129791\|gb\|AAL62457.2\| alpha-cyclodextrinase [Thermus sp. YBJ-1]	322.0	[0..13]	[473..126]
gi\|15375096 - gi\|15375096\|dbj\|BAB63955.1\| alpha-cyclodextrinase [Geobacillus stearothermophilus]	321.0	[0..13]	[473..126]
gi\|7766933, gi\|7... - gi\|7766933\|pdb\|1SMA\|B Chain B, Crystal Structure Of A Maltogenic Amylase, gi\|7766932\|pdb\|1SMA\|A Chai... gi\|3089607 - gi\|3089607\|gb\|AAC15072.1\| maltogenic amylase [Thermus sp. IM6501]	321.0	[0..13]	[473..126]
gi\|159125270 - gi\|159125270\|gb\|EDP50387.1\| alpha-amylase, putative [Aspergillus fumigatus A1163] gi\|66849447, gi\|... - gi\|70993932\|ref\|XP_751813.1\| alpha-amylase [Aspergillus fumigatus Af293], gi\|66849447\|gb\|EAL89775.1\|...	320.0	[0..13]	[472..19]
gi\|157837160, gi... - gi\|443537\|pdb\|6TAA\| Chain , Alpha Amylase (Taka Amylase) (E.C.3.2.1.1), gi\|4139860\|pdb\|7TAA\| Chai... gi\|114794116, gi... - gi\|114794124\|pdb\|2GVY\|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase In Compl...	320.0	[0..14]	[474..1]
gi\|15826099, gi\|... - gi\|62738110\|pdb\|1VB9\|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase ...	319.0	[0..13]	[470..122]

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Predicted Domain #1

Region A:
Residues: [1-478]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLICSILPK KEPSYLKLWR KQVIYQVLTD RFALDEDNFY AKASGNLYLG GTWKGITRNL  60
   61 DYIKSLGCTA IWISPIVKNI SETTDCGQAY HGYWAQDMTQ LNENFGTEED LKELVNAIHE 120
  121 KNMLCMVDIV VNHMGHAGSK PVNFLLYQPF NSGKYYHNWQ FVQNYDDPHE TITGWLGDSH 180
  181 VNLPDIRTEK NEVRKFFQNW VSDLIKRYQF DGIRLDTAKH VEKSFFPTFI EAANVFTTGE 240
  241 VFHGDPKVVG DYQKYLPSTL NFPLFFQLRE TFLDPKHSMF SFYDKAVLDV RHYFKDVTVL 300
  301 CNFLENHDFP RFFHETKDIA LALNALTALI FMDGIPIIYY GQEQMFDGGS DPDNREGLWK 360
  361 SKYNTSNPMF RHLSSMIRTR QNLVETYPEF TYVLSFQLYI DDSVYVFTRP GVIIAISNEG 420
  421 STSSFKVEID LKEHWKEVPS SFTDILTQKT IPCKDHKLKI KSKSGLPKIL ISSDPSFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.154902
Match:	2guyA
Description:	No description for 2guyA was found.

Predicted functions:

Term	Confidence	Notes
hydrolase activity, hydrolyzing O-glycosyl compounds	4.55801959095491	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	4.29108420555514	bayes_pls_golite062009
hydrolase activity	2.98140830993539	bayes_pls_golite062009
alpha-amylase activity	2.09193270404736	bayes_pls_golite062009
amylase activity	2.03484942782894	bayes_pls_golite062009
chitinase activity	1.947859226275	bayes_pls_golite062009
glucosidase activity	1.92306554001182	bayes_pls_golite062009
catalytic activity	1.85569074294201	bayes_pls_golite062009
hexosaminidase activity	0.763360027922833	bayes_pls_golite062009
binding	0.63693798355947	bayes_pls_golite062009
alpha-glucosidase activity	0.502835520523619	bayes_pls_golite062009
carbohydrate binding	0.28185708488534	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	0.266938437560648	bayes_pls_golite062009
beta-N-acetylhexosaminidase activity	0.263065978664289	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: