| Protein: | lsd2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1273 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lsd2.
| Description | E-value | Query Range |
Subject Range |
|
|
736.0 | [0..226] | [1268..794] |
|
|
728.0 | [0..3] | [1266..41] |
|
|
706.0 | [0..123] | [1256..37] |
|
|
645.0 | [0..259] | [1242..14] |
|
|
623.0 | [0..327] | [1243..100] |
|
|
607.0 | [0..289] | [1185..22] |
|
|
605.0 | [0..244] | [1230..27] |
|
|
596.0 | [0..295] | [1267..14] |
|
|
580.0 | [0..327] | [1224..131] |
|
|
568.0 | [0..277] | [1219..91] |
|
Region A: Residues: [1-210] |
1 11 21 31 41 51
| | | | | |
1 MPLGRSSWIC CAKYFVNTKS RFNEILPPRF TLIVSFYSMN TSENDPDGHY DFPEMTEHHS 60
61 DRASSYANAN NVNSTQPQLV SSEQALLAIL GGGLQSITPN SVNQNAYSRS TYRTDGGLNS 120
121 QPVSSLNNQW GNYNPAFLPS RYDSSFHPYT ISQAANQPFP QHLLGNSNAG VAQQSGMRTI 180
181 GLPPTVGSSF PQQKSSTYEN FFDANSPSSQ
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [211-378] |
1 11 21 31 41 51
| | | | | |
1 QFPSTYPSRS QNPLSSSGDG STAIHAGPIQ HQNSNAFSNY PYPLDASHLS SQQLLSMYRD 60
61 QVSHGVTPST FRNHESFMPT QLVSATELSK SVDNAVLPIP PTTAPAVVSP PASSFPLMSS 120
121 AATSGNISSP ALFDSELGAR PEGSVAIEPS RVLLQWSSQS SSHTIPSA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [379-1050] |
1 11 21 31 41 51
| | | | | |
1 GASIPTSSLK SFFEHAAEAA RKCNLDPRAL ESFEQHMLSD RLHDPVVLFH YFQIRNSICW 60
61 LWIKNPTHAI SRVEAQGVCV DRCLFQLASL AYEFLVRYGY INYGCLSFDS SFTNETNTGT 120
121 TSSSASKQKT IAVVGAGLTG LICARQLTGL FSQYSSSFLS KNELPPKVII LEAKERTGGR 180
181 IYSRALPVSH TSATQINHHT SNSNSISSNS TSLNPKDVTD PSHIPSAIDL GFQFLFSPMD 240
241 DILLNLLNKQ LGIEVTEMTG SDLVYDETDT KVLDMVEVKK LNILWEKLLE YVSVCFFINV 300
301 EESVRISWIS QFQLFIDEMF PDHLSKSLSL NASHEFSFKK TMLILIDEVS SYAKLGNSQK 360
361 KFLIWCFKVA ELDDTLYPLN TVDTDFSKDI LIPKVARRGL SQLPWALQSY PSPLNIHYEK 420
421 FVSKVTIEND KCTLDCKDNS SYEVDQVVIA CSPSHFSSNI EFSPGLPNFV TENIKSIDFK 480
481 PGKKVILRYA AAFWRKNIRS FGIIPKSLSQ EMNNDENDGK SCFVLRIWNM LPETGVPILV 540
541 ADINPQMTSS SSNETSHLIQ ELHSLIVDHF QNDSNSSADL LDAWVTNWSR NGVYDGLNSY 600
601 PNFANDKQQY EKRFRQSQLS YNLGRLHIAG DYIFSCVGCR TLQRSFLSGL SVCTGIIDSL 660
661 APISLTIPII GE
|
| Detection Method: | |
| Confidence: | 160.0 |
| Match: | 2v1dA |
| Description: | No description for 2v1dA was found. |
|
Region A: Residues: [1051-1273] |
1 11 21 31 41 51
| | | | | |
1 TSRKELDQFL RNSKVNNFDP NAEAQRHLSY QARYRLKKQE RLDEHKEEQE QLVTELLGYL 60
61 PEPPSKPNAN PFLLYQKMQW HVCRALADED KRRLTGDSTA KATINETRAK LGKTWRQLDD 120
121 LGKKPWIDEI AAQREAYAGK ILRYQRLTKE YEMRAEQIRN DYAAKCQDEP IPDDEARLFM 180
181 QAQREEEQRK QTQDDNISKS REASDEEYHD DGSSDSGYNG TRY
|
| Detection Method: | |
| Confidence: | 23.045757 |
| Match: | 2gzkA |
| Description: | No description for 2gzkA was found. |
| Term | Confidence | Notes |
| DNA binding | 5.15324651287773 | bayes_pls_golite062009 |
| nucleic acid binding | 5.01228762819617 | bayes_pls_golite062009 |
| transcription regulator activity | 4.9607192917135 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 4.06355503548774 | bayes_pls_golite062009 |
| transcription factor activity | 3.82658263870186 | bayes_pls_golite062009 |
| binding | 3.6211482127468 | bayes_pls_golite062009 |
| transcription repressor activity | 3.17018042329608 | bayes_pls_golite062009 |
| transcription activator activity | 2.95665802871704 | bayes_pls_golite062009 |
| protein binding | 2.18211240370246 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.84606709725198 | bayes_pls_golite062009 |
| transcription factor binding | 1.10315330167937 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.02057566176202 | bayes_pls_golite062009 |
| chromatin binding | 0.996049314969019 | bayes_pls_golite062009 |
| DNA bending activity | 0.87985209274756 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.426897554228699 | bayes_pls_golite062009 |
| specific transcriptional repressor activity | 0.4255419067266 | bayes_pls_golite062009 |
