YRC Public Data Repository - Protein Structure Prediction

Protein:	rrp46
Organism:	Schizosaccharomyces pombe
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rrp46.

Description	E-value	Query Range	Subject Range
gi\|69153014, gi\|... - gi\|69935526\|ref\|ZP_00630462.1\| 3' exoribonuclease:RNA binding S1:KH, type 1 [Paracoccus denitrifican...	226.0	[0..2]	[221..353]
gi\|90335247, gi\|... - gi\|90420519\|ref\|ZP_01228426.1\| polyribonucleotide nucleotidyltransferase [Aurantimonas sp. SI85-9A1]... gi\|90335247, gi\|... - gi\|90420519\|ref\|ZP_01228426.1\| polyribonucleotide nucleotidyltransferase [Aurantimonas sp. SI85-9A1]...	225.0	[0..1]	[221..330]
gi\|89350148, gi\|... - gi\|89361251\|ref\|ZP_01199067.1\| RNA binding S1:KH [Xanthobacter autotrophicus Py2], gi\|89350148\|gb\|EA...	224.0	[0..1]	[222..384]
gi\|114540009, gi... - gi\|114705224\|ref\|ZP_01438132.1\| polyribonucleotide nucleotidyltransferase [Fulvimarina pelagi HTCC25...	224.0	[0..1]	[221..330]
PNP_RHIEC - Polyribonucleotide nucleotidyltransferase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=pnp PE=3...	223.0	[0..1]	[221..329]
PNP_RHIME - Polyribonucleotide nucleotidyltransferase OS=Rhizobium meliloti GN=pnp PE=3 SV=1 PNP_RHIME - Polyribonucleotide nucleotidyltransferase OS=Rhizobium meliloti (strain 1021) GN=pnp PE=3 SV=1	223.0	[0..1]	[221..330]
PNP_CARHZ - Polyribonucleotide nucleotidyltransferase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 ...	223.0	[0..2]	[219..340]
PNP_CHESB - Polyribonucleotide nucleotidyltransferase OS=Chelativorans sp. (strain BNC1) GN=pnp PE=3 SV=1	223.0	[0..1]	[221..330]
gi\|25311841, gi\|... - pir\|\|AE2586 polyribonucleotide nucleotidyltransferase pnpA [imported] - Agrobacterium tumefaciens (s... PNP_AGRFC - Polyribonucleotide nucleotidyltransferase OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=pnp P...	223.0	[0..1]	[221..329]
PNP_RHILO - Polyribonucleotide nucleotidyltransferase OS=Rhizobium loti (strain MAFF303099) GN=pnp PE=3 SV=1 PNP_RHILO - Polyribonucleotide nucleotidyltransferase OS=Rhizobium loti GN=pnp PE=3 SV=1	222.0	[0..1]	[221..330]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRIGILSRS DGSSEWKQGS ARVICGVNGP IDVKIRDERL NKATVEVLVQ PVSGVAETLE  60
   61 KMISSRIVGI LEDAIFLNTY PRTLIQVSIQ IIEEDGTDTL AAVINGAVLA LLDAGISLKY 120
  121 IPCAINCHWK NKITQDEPDV DGTINKLESI ITICYSISSE PAKLIFLETA GPIPEEDFFR 180
  181 VLETAPLHAE EVSKKMKELL FETYNESDGH ENEKNPKEDV EMDVVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	2nn6D
Description:	No description for 2nn6D was found.

Predicted functions:

Term	Confidence	Notes
exoribonuclease activity	7.55877202113513	bayes_pls_golite062009
ribonuclease activity	7.54644729272203	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	7.5310318714913	bayes_pls_golite062009
3'-5'-exoribonuclease activity	6.46930372693262	bayes_pls_golite062009
3'-5' exonuclease activity	4.29895100594643	bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	3.83939403332553	bayes_pls_golite062009
exonuclease activity	3.40686901061667	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	2.86434572018929	bayes_pls_golite062009
RNA binding	2.05527376734941	bayes_pls_golite062009
structural constituent of ribosome	1.90115575554186	bayes_pls_golite062009
structural molecule activity	1.69321127364043	bayes_pls_golite062009
hydrolase activity	1.55476709794855	bayes_pls_golite062009
transcription regulator activity	1.20748032530392	bayes_pls_golite062009
mRNA binding	1.17402119891853	bayes_pls_golite062009
nucleic acid binding	1.05662964529454	bayes_pls_golite062009
binding	0.907487229190259	bayes_pls_golite062009
catalytic activity	0.878454819018611	bayes_pls_golite062009
DNA binding	0.828609700556836	bayes_pls_golite062009
nuclease activity	0.69721312877891	bayes_pls_golite062009
carbohydrate kinase activity	0.51810239718467	bayes_pls_golite062009
tRNA-specific ribonuclease activity	0.383567539949931	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0287026367466632	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: