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View Structure Prediction Details

Protein: pyp2
Organism: Schizosaccharomyces pombe
Length: 711 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pyp2.

Description E-value Query
Range
Subject
Range
gi|11263050, gi|5281 - gi|5281|emb|CAA42167.1| protein-tyrosine phosphatase [Schizosaccharomyces pombe], pir||T45160 protei...
579.0 [0..1] [711..1]
gi|56208205, gi|... - gi|56208205|emb|CAI19870.1| protein tyrosine phosphatase, receptor type, T [Homo sapiens], gi|562039...
417.0 [0..107] [706..512]
gi|162318544, gi... - gi|225000384|gb|AAI72678.1| Protein tyrosine phosphatase, receptor type, T [synthetic construct], gi...
gi|123239886, gi... - gi|7271965|gb|AAF44712.1|AF244125_1 receptor protein tyrosine phosphatase RPTPmam4 [Mus musculus], g...
416.0 [0..107] [706..516]

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Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHLLSKDEF NSTLKSFEEQ TESVSWIIDL RLHSKYAVSH IKNAINVSLP TALLRRPSFD  60
   61 IGKVFACIKC NVKVSLDEIN AIFLYDSSMA GMNRIYDLVQ KFRRG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.221849
Match: 1hzmA
Description: Erk2 binding domain of Mapk phosphatase mkp-3
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
phosphoprotein phosphatase activity 4.79074052803751 bayes_pls_golite062009
phosphatase activity 4.46276380920308 bayes_pls_golite062009
phosphoric ester hydrolase activity 4.26891308022499 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 3.37977783690618 bayes_pls_golite062009
protein tyrosine phosphatase activity 2.84204105189999 bayes_pls_golite062009
transferase activity 2.02756030435235 bayes_pls_golite062009
binding 1.72957395505299 bayes_pls_golite062009
protein binding 1.56606332199727 bayes_pls_golite062009
catalytic activity 0.687308230067573 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [106-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYSKKIYLLS NGFEAFASSH PDAIVSTEMV KESVPYKIDI NENCKLDILH LSDPSAVSTP  60
   61 ISPDYSFPLR VPINIPPPLC TPSVVSDTFS EFASHAEYPG FSGLTPFSIH SPTASSVRSC 120
  121 QSIYGSPLSP PNSAFQAEMP YFPISPAISC ASSCPSTPDE QKNFFIVGNA PQQTPARPSL 180
  181 RSVPSYPSSN NQRRPSASRV RSFSNYVKSS NVVNPSLSQA SLEI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.045757
Match: 2v5yA
Description: No description for 2v5yA was found.

Predicted Domain #3
Region A:
Residues: [330-711]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPRKSMKRDS NAQNDGTSTM TSKLKPSVGL SNTRDAPKPG GLRRANKPCF NKETKGSIFS  60
   61 KENKGPFTCN PWGAKKVSPP PCEVLADLNT ASIFYKFKRL EEMEMTRSLA FNDSKSDWCC 120
  121 LASSRSTSIS RKNRYTDIVP YDKTRVRLAV PKGCSDYINA SHIDVGNKKY IACQAPKPGT 180
  181 LLDFWEMVWH NSGTNGVIVM LTNLYEAGSE KCSQYWPDNK DHALCLEGGL RISVQKYETF 240
  241 EDLKVNTHLF RLDKPNGPPK YIHHFWVHTW FDKTHPDIES ITGIIRCIDK VPNDGPMFVH 300
  301 CSAGVGRTGT FIAVDQILQV PKNILPKTTN LEDSKDFIFN CVNSLRSQRM KMVQNFEQFK 360
  361 FLYDVVDYLN SGVNQASKPL MT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.0
Match: 2b3oA
Description: Crystal structure of human tyrosine phosphatase SHP-1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle