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View Structure Prediction Details

Protein: SPAC4F10.05c
Organism: Schizosaccharomyces pombe
Length: 219 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC4F10.05c.

Description E-value Query
Range		 Subject
Range
LIPB_VIBPA - Octanoyltransferase OS=Vibrio parahaemolyticus GN=lipB PE=3 SV=1
LIPB_VIBPA - Octanoyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=lipB PE=3 SV=...
 279.0 [0..5] [217..1]
LIPB_XANAC - Octanoyltransferase OS=Xanthomonas axonopodis pv. citri GN=lipB PE=3 SV=1
LIPB_XANAC - Octanoyltransferase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=lipB PE=3 SV=1
 278.0 [0..11] [217..20]
LIPB_XANC5 - Octanoyltransferase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=lipB PE=3 SV=1
 276.0 [0..11] [217..20]
gi|74095594 - gi|74095594|emb|CAJ27360.1| strongly similar to lipoyltransferase [Enterobacter sakazakii]
 276.0 [0..9] [217..6]
LIPB_XANCP - Octanoyltransferase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 5...
LIPB_XANC8 - Octanoyltransferase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=lipB PE=3 SV=1
LIPB_XANCP - Octanoyltransferase OS=Xanthomonas campestris pv. campestris GN=lipB PE=3 SV=1
 276.0 [0..11] [217..20]
LIPB_PSEU2 - Octanoyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lipB PE=3 SV=1
 275.0 [0..11] [217..7]
LIPB_PHOLL - (Q7N766) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier protein]-protein -N-lipoyltransferase)...
gi|36784686, gi|... - gi|37525259|ref|NP_928603.1| lipoyltransferase [Photorhabdus luminescens subsp. laumondii TTO1], gi|...
 275.0 [0..3] [219..12]
LIPB_VIBVY - Octanoyltransferase OS=Vibrio vulnificus (strain YJ016) GN=lipB PE=3 SV=1
 275.0 [0..5] [217..1]
LIPB_PHOPR - Octanoyltransferase OS=Photobacterium profundum (strain SS9) GN=lipB PE=3 SV=1
LIPB_PHOPR - Octanoyltransferase OS=Photobacterium profundum GN=lipB PE=3 SV=1
 275.0 [0..5] [216..1]
gi|157644760 - gi|157644760|gb|ABV59089.1| lipoate-protein ligase B [Pseudomonas syringae pv. averrhoi]
LIPB_PSE14 - Octanoyltransferase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=lipB PE=3 ...
 274.0 [0..11] [217..7]

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Predicted Domain #1
Region A:
Residues: [1-219] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKIQHISFI TKKNPLVSYE RVGALQNRFV QHYLNYKANK VEQPPKPTII TSQVCPVYTL  60
   61 GRRESSINFT KGFPKAKVVK ALRGGQTTFH GPGQILAYPI IDLKSFGLSP REYVSRLEQA 120
  121 IIATCKSFGI EKAHTTKNTG VWVTENDKIA AIGIHLRRNI TSHGLALNVS TDLKYFNYIV 180
  181 GCGLYGKNTT SFKDQGVFTD LKSVEKVLVN NLDSFLMSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.221849
Match: 1w66A
Description: Title withheld
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
aminoacyl-tRNA ligase activity 4.025601351766 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 4.02412423650651 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 4.02412423650651 bayes_pls_golite062009
ligase activity 3.51191116674556 bayes_pls_golite062009
catalytic activity 1.99372273395202 bayes_pls_golite062009
phenylalanine-tRNA ligase activity 0.91205340076545 bayes_pls_golite062009
binding 0.521863822270226 bayes_pls_golite062009
serine-tRNA ligase activity 0.410923263101581 bayes_pls_golite062009
glycine-tRNA ligase activity 0.25613083187245 bayes_pls_golite062009
ATP binding 0.18403217430648 bayes_pls_golite062009
adenyl ribonucleotide binding 0.145955341735342 bayes_pls_golite062009
threonine-tRNA ligase activity 0.133891091298639 bayes_pls_golite062009
adenyl nucleotide binding 0.127823774098159 bayes_pls_golite062009
protein binding 0.0101455326199739 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle