YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC646.03
Organism:	Schizosaccharomyces pombe
Length:	471 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC646.03.

Description	E-value	Query Range	Subject Range
GATA_PELCD - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1...	529.0	[0..1]	[470..15]
gi\|95132536, gi\|... - gi\|95931418\|ref\|ZP_01314126.1\| glutamyl-tRNA(Gln) amidotransferase, A subunit [Desulfuromonas acetox...	527.0	[0..1]	[470..15]
GATA1_CLOAB - Glutamyl-tRNA(Gln) amidotransferase subunit A 1 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM... GATA1_CLOAB, GAA... - Glutamyl-tRNA(Gln) amidotransferase subunit A 1 OS=Clostridium acetobutylicum GN=gatA1 PE=3 SV=1, (Q...	526.0	[0..1]	[470..15]
gi\|87120475, gi\|... - gi\|87120475\|ref\|ZP_01076369.1\| glutamyl-tRNA(Gln) amidotransferase, A subunit [Marinomonas sp. MED12...	526.0	[0..1]	[470..13]
GATA_GEOUR - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter uraniireducens (strain Rf4) GN=gatA PE=3 ...	523.0	[0..1]	[470..15]
gi\|82401416, gi\|... - gi\|82500598\|ref\|ZP_00886005.1\| Glutamyl-tRNA(Gln) amidotransferase A subunit [Caldicellulosiruptor s...	520.0	[0..1]	[470..14]
gi\|241884962, gi... - gi\|241902708\|ref\|ZP_04787440.1\| glutamyl-tRNA(Gln) amidotransferase, A subunit [Thermoanaerobacter b... GATA_THEP3 - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33...	520.0	[0..1]	[470..15]
GATA_THEPX - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter sp. (strain X514) GN=gatA PE=3 S...	520.0	[0..1]	[470..15]
GATA_THETN - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter tengcongensis GN=gatA PE=3 SV=1 GATA_CALS4 - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Caldanaerobacter subterraneus subsp. tengcongensis ...	520.0	[0..1]	[470..15]

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Predicted Domain #1

Region A:
Residues: [1-471]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKYNNLLK EVAAKYASII LNDAKIKSLT SINSAEYLYD SFVEISKLPL EKKLPLKWKL  60
   61 ITVKENICTK TNLTTAASNM LKDYNSPFDA SIVESLKKAG GIILGKTNMD EFAMGVKSEN 120
  121 NLFGRTVNPV VKDSNYDVGG SSGGAAAAIA ADICYASVGS DTGGSIRLPA AYVGCVGFKP 180
  181 SFGRISRYGM LAFANSFDTV GIAANNVKGV TKVFNVLDHP DINDSTCLTK EARYFVKEQH 240
  241 KKLSRKPIKI GIPIDWNVSE THPNVLDKWN EFISLLKSNG YLVQEIQLPI SLYANSVYST 300
  301 MAYAEATSNL AKYNTIAFGN CLDEKFEEEI ISSTARSFFL GDEVKKRLLL GAYSLARMNS 360
  361 SDLFSKARYV RRAIQLEFNK NFFLPSFSVD DPRGDIDFIV TPSFFNSSQP IETPSSYSHL 420
  421 SDTMLVPANM AGIPSVSIPF GTLNNGLPMG IQIMAQYLND EDLLSFAGQF A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	136.0
Match:	2df4A
Description:	No description for 2df4A was found.

Predicted functions:

Term	Confidence	Notes
glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	7.42914157198604	bayes_pls_golite062009
ligase activity	3.16753436373904	bayes_pls_golite062009
binding	1.24905380693412	bayes_pls_golite062009
catalytic activity	0.906509857495572	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.301483171038292	bayes_pls_golite062009
protein binding	0.276132955069873	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: