| Protein: | pol5 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 959 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pol5.
| Description | E-value | Query Range |
Subject Range |
|
|
867.0 | [0..7] | [907..34] |
|
|
815.0 | [0..7] | [906..34] |
|
|
812.0 | [0..7] | [892..36] |
|
|
812.0 | [0..5] | [934..3] |
|
|
803.0 | [0..7] | [936..23] |
|
Region A: Residues: [1-660] |
1 11 21 31 41 51
| | | | | |
1 MATKTQLELF TKLTSNDKAI RLSSAAQLID SLSNEEELKY SLNRLTKGLS SGRESARIGF 60
61 AVALTELLTR TKDIRATHVL DLLVKHNTAS GNLKGQDERD FYFGLLFGLQ SIVYSGILTH 120
121 KESTIEDFQR VVDLLLQLSG KKNWLQDVCF YVIYKLVEQI PEISFSSNAF LAVNKLLQTP 180
181 AVSKSTEGVG LFLCLTRVPD NVKSEEVAMA NWEPAHPLHK SNLVTLSKIM RQADASETGG 240
241 QNSAWKQKIP MVWKYIFEEY QRKTYSGLAP FHDFWAVVVD EGIFSSTSSL ERKFWGFQIM 300
301 ELALDYVSSD NIGDIFSKNF LHCLINHLSD EDRYLYRAAK RVTSKLEKVS KQNPTLVYPI 360
361 AIHLLGERGS LNFDRVTNTK LVEHILPLAD EQGILQLFQL LLSYVKRCPE DIASDTKAVE 420
421 WRRQWATDTM LSILRSKRSI KQEPWVRELL EIFIAYGYFE VPESEEVIPK FSEGTQNMFR 480
481 LRLMSALSYL SSSAFQQSQT DHQLGDKNWP YVALNYLLEL EKSPKNNLLI SMDESVIEIV 540
541 QKSLSVLHKV TKKIDKKAQH LQQLNAFQLL YSLVLLQVYA GDTDSIDVLE DIDNCYSKVF 600
601 NKKSKRESTS NEPTAMEILT EVMLSLLSRP SLLLRKLVDM LFTSFSEDMN RESIHLICDV 660
661
|
| Detection Method: |  |
| Confidence: | 1.52 |
| Match: | 1gw5B |
| Description: | Adaptin beta subunit N-terminal fragment |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.4840129457355 | bayes_pls_golite062009 |
| nucleic acid binding | 2.27889073911459 | bayes_pls_golite062009 |
| transcription regulator activity | 2.19067997822967 | bayes_pls_golite062009 |
| actin binding | 1.7228099998642 | bayes_pls_golite062009 |
| DNA binding | 1.71679738414596 | bayes_pls_golite062009 |
| protein binding | 1.41127231900194 | bayes_pls_golite062009 |
| transcription factor activity | 1.01026749293758 | bayes_pls_golite062009 |
| transition metal ion binding | 0.301301625996911 | bayes_pls_golite062009 |
| structural molecule activity | 0.279533827088985 | bayes_pls_golite062009 |
| RNA binding | 0.243875756041061 | bayes_pls_golite062009 |
| transcription activator activity | 0.142253868848261 | bayes_pls_golite062009 |
| transcription factor binding | 8.79739237675814E-4 | bayes_pls_golite062009 |
|
Region A: Residues: [661-794] |
1 11 21 31 41 51
| | | | | |
1 LKAKESVKDS EGMFAGEEVE EDAFGETEMD EDDFEEIDTD EIEEQSDWEM ISNQDASDNE 60
61 ELERKLDKVL EDADAKVKDE ESSEEELMND EQMLALDEKL AEVFRERKKA SNKEKKKNAQ 120
121 ETKQQIVQFK VKVI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [795-959] |
1 11 21 31 41 51
| | | | | |
1 DLIDNYYKTQ PNNGLGFEFL IPLLEMILKT KHKVLEEKGQ AVFRNRLSKL KWTEEKPSSK 60
61 NVLEALKKVH VLCGKKASLG STGSSISQLL LKLLADTPYL KEGVEVYLKS FLLWIQEPSK 120
121 SHYNANIFHD FINWGAQQRL KHQQTSTAAS SPQKTGHHEN EKTNH
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
