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View Structure Prediction Details

Protein: pol5
Organism: Schizosaccharomyces pombe
Length: 959 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pol5.

Description E-value Query
Range
Subject
Range
MBB1A_MOUSE - Myb-binding protein 1A OS=Mus musculus GN=Mybbp1a PE=1 SV=2
867.0 [0..7] [907..34]
MBB1A_RAT - Myb-binding protein 1A OS=Rattus norvegicus GN=Mybbp1a PE=1 SV=2
815.0 [0..7] [906..34]
gi|7657351, gi|6... - gi|7657351|ref|NP_055335.1| MYB binding protein 1a [Homo sapiens], gi|6959304|gb|AAF33021.1|AF147709...
812.0 [0..7] [892..36]
orf19.13042 - POL5 CGDID:CAL0006292 Assembly 19, Contig19-20230 (151697, 154864) CDS, translated using codon table...
gi|46441085, gi|... - gi|68473432|ref|XP_719274.1| hypothetical protein CaO19.13042 [Candida albicans SC5314], gi|46441085...
812.0 [0..5] [934..3]
gi|67526973, gi|... - gi|67526973|ref|XP_661548.1| hypothetical protein AN3944.2 [Aspergillus nidulans FGSC A4], ref|XP_40...
803.0 [0..7] [936..23]

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Predicted Domain #1
Region A:
Residues: [1-660]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKTQLELF TKLTSNDKAI RLSSAAQLID SLSNEEELKY SLNRLTKGLS SGRESARIGF  60
   61 AVALTELLTR TKDIRATHVL DLLVKHNTAS GNLKGQDERD FYFGLLFGLQ SIVYSGILTH 120
  121 KESTIEDFQR VVDLLLQLSG KKNWLQDVCF YVIYKLVEQI PEISFSSNAF LAVNKLLQTP 180
  181 AVSKSTEGVG LFLCLTRVPD NVKSEEVAMA NWEPAHPLHK SNLVTLSKIM RQADASETGG 240
  241 QNSAWKQKIP MVWKYIFEEY QRKTYSGLAP FHDFWAVVVD EGIFSSTSSL ERKFWGFQIM 300
  301 ELALDYVSSD NIGDIFSKNF LHCLINHLSD EDRYLYRAAK RVTSKLEKVS KQNPTLVYPI 360
  361 AIHLLGERGS LNFDRVTNTK LVEHILPLAD EQGILQLFQL LLSYVKRCPE DIASDTKAVE 420
  421 WRRQWATDTM LSILRSKRSI KQEPWVRELL EIFIAYGYFE VPESEEVIPK FSEGTQNMFR 480
  481 LRLMSALSYL SSSAFQQSQT DHQLGDKNWP YVALNYLLEL EKSPKNNLLI SMDESVIEIV 540
  541 QKSLSVLHKV TKKIDKKAQH LQQLNAFQLL YSLVLLQVYA GDTDSIDVLE DIDNCYSKVF 600
  601 NKKSKRESTS NEPTAMEILT EVMLSLLSRP SLLLRKLVDM LFTSFSEDMN RESIHLICDV 660
  661 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.52
Match: 1gw5B
Description: Adaptin beta subunit N-terminal fragment
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 3.4840129457355 bayes_pls_golite062009
nucleic acid binding 2.27889073911459 bayes_pls_golite062009
transcription regulator activity 2.19067997822967 bayes_pls_golite062009
actin binding 1.7228099998642 bayes_pls_golite062009
DNA binding 1.71679738414596 bayes_pls_golite062009
protein binding 1.41127231900194 bayes_pls_golite062009
transcription factor activity 1.01026749293758 bayes_pls_golite062009
transition metal ion binding 0.301301625996911 bayes_pls_golite062009
structural molecule activity 0.279533827088985 bayes_pls_golite062009
RNA binding 0.243875756041061 bayes_pls_golite062009
transcription activator activity 0.142253868848261 bayes_pls_golite062009
transcription factor binding 8.79739237675814E-4 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [661-794]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKAKESVKDS EGMFAGEEVE EDAFGETEMD EDDFEEIDTD EIEEQSDWEM ISNQDASDNE  60
   61 ELERKLDKVL EDADAKVKDE ESSEEELMND EQMLALDEKL AEVFRERKKA SNKEKKKNAQ 120
  121 ETKQQIVQFK VKVI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [795-959]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLIDNYYKTQ PNNGLGFEFL IPLLEMILKT KHKVLEEKGQ AVFRNRLSKL KWTEEKPSSK  60
   61 NVLEALKKVH VLCGKKASLG STGSSISQLL LKLLADTPYL KEGVEVYLKS FLLWIQEPSK 120
  121 SHYNANIFHD FINWGAQQRL KHQQTSTAAS SPQKTGHHEN EKTNH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle