YRC Public Data Repository - Protein Structure Prediction

Protein:	abc1
Organism:	Schizosaccharomyces pombe
Length:	610 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for abc1.

Description	E-value	Query Range	Subject Range
gi\|67540804, gi\|... - gi\|67540804\|ref\|XP_664176.1\| hypothetical protein AN6572.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	276.0	[0..3]	[608..157]
gi\|77978478 - gi\|77978478\|ref\|ZP_00833906.1\| COG0661: Predicted unusual protein kinase [Yersinia intermedia ATCC 2...	247.0	[0..186]	[609..8]
gi\|77973694 - gi\|77973694\|ref\|ZP_00829240.1\| COG0661: Predicted unusual protein kinase [Yersinia frederiksenii ATC...	246.0	[0..186]	[609..8]
UBIB_PECAS - Probable protein kinase UbiB OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ubi... UBIB_ERWCT - Probable ubiquinone biosynthesis protein UbiB OS=Erwinia carotovora subsp. atroseptica GN=ubiB PE=3 ...	245.0	[0..186]	[609..8]
gi\|77956559 - gi\|77956559\|ref\|ZP_00820649.1\| COG0661: Predicted unusual protein kinase [Yersinia bercovieri ATCC 4...	245.0	[0..186]	[609..8]
gi\|71909480, gi\|... - gi\|71909480\|ref\|YP_287067.1\| putative ubiquinone biosynthesis protein UbiB [Dechloromonas aromatica ...	245.0	[0..182]	[608..1]
gi\|77961743 - gi\|77961743\|ref\|ZP_00825574.1\| COG0661: Predicted unusual protein kinase [Yersinia mollaretii ATCC 4...	245.0	[0..186]	[609..8]
gi\|194417706, gi... - gi\|83569329\|ref\|ZP_00920784.1\| COG0661: Predicted unusual protein kinase [Shigella dysenteriae 1012]...	243.0	[0..179]	[609..1]
UBIB_SHISS - Probable protein kinase UbiB OS=Shigella sonnei (strain Ss046) GN=ubiB PE=3 SV=1	243.0	[0..179]	[609..1]
gi\|189373443, gi... - gi\|189373443\|gb\|EDU91859.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC869], ... UBIB_ECOLC - Probable protein kinase UbiB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ubiB PE=3... gi\|189001589, gi... - gi\|189001589\|gb\|EDU70575.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC4076],... gi\|195938127 - gi\|195938127\|ref\|ZP_03083509.1\| putative ubiquinone biosynthesis protein UbiB [Escherichia coli O157... UBIB_ECODH - Probable protein kinase UbiB OS=Escherichia coli (strain K12 / DH10B) GN=ubiB PE=3 SV=1 gi\|208733567, gi... - gi\|208812290\|ref\|ZP_03253619.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC40... gi\|208727796, gi... - gi\|208807995\|ref\|ZP_03250332.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC42... UBIB_ECO5E - Probable protein kinase UbiB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ubiB PE=3 SV=1 gi\|208820947, gi... - gi\|208820947\|ref\|ZP_03261267.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC40... gi\|75230796, gi\|... - gi\|75230796\|ref\|ZP_00717259.1\| COG0661: Predicted unusual protein kinase [Escherichia coli B7A], gi\|... EG11476 - regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'-N-acetyltransfera... gi\|192958594, gi... - gi\|75238285\|ref\|ZP_00722284.1\| COG0661: Predicted unusual protein kinase [Escherichia coli E110019],... gi\|193065683, gi... - gi\|75256241\|ref\|ZP_00727919.1\| COG0661: Predicted unusual protein kinase [Escherichia coli E22], gi\|... gi\|168750347, gi... - gi\|188015449\|gb\|EDU53571.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC4113],... gi\|188494035, gi... - gi\|75512610\|ref\|ZP_00735122.1\| COG0661: Predicted unusual protein kinase [Escherichia coli 53638], g... UBIB_SHIDS - Probable protein kinase UbiB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ubiB PE=3 SV=1 gi\|168763966, gi... - gi\|189365980\|gb\|EDU84396.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC4501],... UBIB_SHIBS - Probable protein kinase UbiB OS=Shigella boydii serotype 4 (strain Sb227) GN=ubiB PE=3 SV=1 gi\|168753738, gi... - gi\|189358933\|gb\|EDU77352.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC4401],... gi\|85676216, gi\|... - gi\|89110185\|ref\|AP_003965.1\| 2-octaprenylphenol hydroxylase [Escherichia coli str. K-12 substr. W311... gi\|168775608, gi... - gi\|187768854\|gb\|EDU32698.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC4196],... gi\|189362586, gi... - gi\|189362586\|gb\|EDU81005.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC4486],... UBIB_SHIFL - Probable protein kinase UbiB OS=Shigella flexneri GN=ubiB PE=3 SV=1 gi\|194422395, gi... - gi\|83585904\|ref\|ZP_00924543.1\| COG0661: Predicted unusual protein kinase [Escherichia coli 101-1], g... gi\|30043128, gi\|... - gi\|30064868\|ref\|NP_839039.1\| putative ubiquinone biosynthesis protein UbiB [Shigella flexneri 2a str... UBIB_SHIB3 - Probable protein kinase UbiB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ubiB PE=... gi\|24115131, gi\|... - gi\|24115131\|ref\|NP_709641.1\| putative ubiquinone biosynthesis protein UbiB [Shigella flexneri 2a str... UBIB_ECO24 - Probable protein kinase UbiB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ubiB PE=3 SV=1 UBIB_ECOBW - Probable protein kinase UbiB OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=ubiB PE=3 SV=1 EG11476 - regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'-N-acetyltransfera... UBIB_ECOHS - Probable protein kinase UbiB OS=Escherichia coli O9:H4 (strain HS) GN=ubiB PE=3 SV=1 gi\|251787107, gi... - gi\|251787107\|ref\|YP_003001411.1\| hypothetical protein B21_03677 [Escherichia coli BL21], gi\|24237938... UBIB_ECO57 - Probable protein kinase UbiB OS=Escherichia coli O157:H7 GN=ubiB PE=3 SV=1 gi\|75209538, gi\|... - gi\|75209538\|ref\|ZP_00709759.1\| COG0661: Predicted unusual protein kinase [Escherichia coli B171], gi... gi\|253326568, gi... - gi\|254290544\|ref\|YP_003056292.1\| putative ubiquinone biosynthesis protein UbiB [Escherichia coli BL2... UBIB_ECOLI - Probable ubiquinone biosynthesis protein ubiB - Escherichia coli gi\|217320919, gi... - gi\|217324698\|ref\|ZP_03440782.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. TW14... gi\|254163794, gi... - gi\|254163794\|ref\|YP_003046902.1\| putative ubiquinone biosynthesis protein UbiB [Escherichia coli B s... gi\|12518712, gi\|... - gi\|15804427\|ref\|NP_290467.1\| putative ubiquinone biosynthesis protein UbiB [Escherichia coli O157:H7... UBIB_ECOSE - Probable protein kinase UbiB OS=Escherichia coli (strain SE11) GN=ubiB PE=3 SV=1 gi\|254795833, gi... - gi\|254795833\|ref\|YP_003080670.1\| 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway [... UBIB_ECO55 - Probable protein kinase UbiB OS=Escherichia coli (strain 55989 / EAEC) GN=ubiB PE=3 SV=1 UBIB_ECO8A - Probable protein kinase UbiB OS=Escherichia coli O8 (strain IAI1) GN=ubiB PE=3 SV=1 gi\|13364241, gi\|... - gi\|15834019\|ref\|NP_312792.1\| putative ubiquinone biosynthesis protein UbiB [Escherichia coli O157:H7... UBIB_SHIF8 - Probable protein kinase UbiB OS=Shigella flexneri serotype 5b (strain 8401) GN=ubiB PE=3 SV=1 gi\|124530428, gi... - gi\|124530428\|ref\|ZP_01701086.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli B], gi\|124499194\|...	243.0	[0..179]	[609..1]

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Predicted Domain #1

Region A:
Residues: [1-610]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSGLWELI TIGSAVRNVA KSYLKAEASS ITAKQLYDAS KITSSKRSTS DLHVQLLEKY  60
   61 RNGKVKHASQ IKELGLSSKD TKRTLLGNSL DVQKDASGVK HLQEQSSKEI KNPISQPILP 120
  121 NKKDEISPAK PSAIDSSIKD VTKSHPATNA NFTADFESSI EESYSTENKS PVILSSSKVP 180
  181 SSQWSRLWHY GGLATSLSVG AIGEKMKRMW GISKDDGALL LNERNVEILV NKLTQMRGAA 240
  241 LKMGQMLSFQ DSKLIDPRVS QILERVRDGA HSMPEKQLEQ VMVKNLGKNW MTHYSEFDRK 300
  301 PMAAASIGQV HRARLASNHM EVVVKVQYPG VMSSIDSDLN NLAYLLKASR ILPKGLFLEN 360
  361 SLAAARKELK WECDYEREAA FAERFGSLLK NDSDFKVPMV FREASGPSVI TLEYLHGIAL 420
  421 GKQKYSQATR NHIGYLLTKQ CLREISEYHF MQTDPNWSNF LYNGKTKKIE LLDFGASIEY 480
  481 DEKFIKKYCR LLLAAAHRNR EKCKKLSVEL GYLNNHESAQ MIDAHINSIF TLAEPFAFDA 540
  541 PDVYDFGDQT ITARVKQQIP VMLDLRLQPP PEETYSLHRR LSGHFLLCAK LGAKVRCKEL 600
  601 FSGMLKHYAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	2h8hA
Description:	No description for 2h8hA was found.

Predicted functions:

Term	Confidence	Notes
binding	2.12082056517987	bayes_pls_golite062009
protein kinase activity	2.08446867830553	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	2.03708864261503	bayes_pls_golite062009
kinase activity	1.80709202193001	bayes_pls_golite062009
protein serine/threonine kinase activity	1.49093744407686	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.45211613252961	bayes_pls_golite062009
catalytic activity	1.21655087018101	bayes_pls_golite062009
protein binding	1.12583111976692	bayes_pls_golite062009
transferase activity	1.09650209608069	bayes_pls_golite062009
molecular adaptor activity	0.93584922485564	bayes_pls_golite062009
signal transducer activity	0.89401161468552	bayes_pls_golite062009
molecular transducer activity	0.89401161468552	bayes_pls_golite062009
SH3/SH2 adaptor activity	0.72842829338771	bayes_pls_golite062009
protein tyrosine kinase activity	0.47596938712977	bayes_pls_golite062009
transmembrane receptor activity	0.47272580800049	bayes_pls_golite062009
transmembrane receptor protein kinase activity	0.45041664249591	bayes_pls_golite062009
receptor activity	0.43062446981697	bayes_pls_golite062009
protein binding, bridging	0.25357576643216	bayes_pls_golite062009
transmembrane receptor protein tyrosine kinase activity	0.14090010343314	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: