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View Structure Prediction Details

Protein: ric8a-PA, FBpp03...
Organism: Drosophila melanogaster
Length: 573 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ric8a-PA, FBpp03....

Description E-value Query
Range
Subject
Range
RIC8B_MOUSE - Synembryn-B OS=Mus musculus GN=Ric8b PE=1 SV=1
654.0 [0..2] [568..3]

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Predicted Domain #1
Region A:
Residues: [1-573]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METEHLKRLE AKEADHIPAI LDEFNTKNAD LLVFDSFRTD NLWHELWLAI FGILDDQRLS  60
   61 HLHTQCLNTV RILTRDEFSL QTNYIEQEVN TLLKLARIEA GSLKLPATPD ELKQEEREEP 120
  121 QLEPSQAQSE VIAEALKCLC NLVYQSSDCR RQCLRQHCLD AILKRVASSM RHPCALEYYD 180
  181 MKLLFLLTAL EPAARSRLQI DLNGLTYMTK WLDDKLGEDS VGEEQLNIIC ELLKVMFNVT 240
  241 SAPDKSPNEY EIQSLHLTGV LRELLLRFGD LATEKDRAVV THAINLLTNI SGSCLTELTL 300
  301 RCSNAELESH KEREQDNEKE KDTEAGAGAK PRECCSQCFE KRNVRSLDVL LRYLRQSLAQ 360
  361 QEAEASSHEL LSPVLTVLVK CARSDRVMRH YLRQEILPPL RDVSQRPEVG QELRNHLCRF 420
  421 LTLPAMILRD LSAELLFVLC KENVGRMIKY TGYGNAAGLF AKRGILDCRR VEGTDYSSDS 480
  481 EDSDTEEYKQ QQQGINPVLG CVEPRSKSHL DDISEEQKEY EAMQLVNLIE QLRQGGIVKP 540
  541 AMIDKDGRPQ PLEHILQLQE ELPQQQLDQK RKT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.13
Match: 2gl7A
Description: No description for 2gl7A was found.

Predicted functions:

Term Confidence Notes
protein transporter activity 2.39228656281234 bayes_pls_golite062009
transporter activity 2.33552524809949 bayes_pls_golite062009
binding 2.32095856197757 bayes_pls_golite062009
substrate-specific transporter activity 1.84332793919001 bayes_pls_golite062009
protein binding 1.61131270705552 bayes_pls_golite062009
nucleic acid binding 1.42084326734073 bayes_pls_golite062009
transmembrane transporter activity 1.23535249814494 bayes_pls_golite062009
molecular transducer activity 1.07458868889742 bayes_pls_golite062009
signal transducer activity 1.07458868889742 bayes_pls_golite062009
peptide binding 0.945352966332572 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.77593418182529 bayes_pls_golite062009
transcription regulator activity 0.688926699413612 bayes_pls_golite062009
protein transmembrane transporter activity 0.646859295714843 bayes_pls_golite062009
DNA binding 0.604001085938821 bayes_pls_golite062009
active transmembrane transporter activity 0.229435071193924 bayes_pls_golite062009
cytoskeletal protein binding 0.187924119511902 bayes_pls_golite062009
receptor binding 0.109094659157491 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle