| Protein: | LpR2-PB |
| Organism: | Drosophila melanogaster |
| Length: | 826 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LpR2-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
621.0 | [0..3] | [826..198] |
|
Region A: Residues: [1-718] |
1 11 21 31 41 51
| | | | | |
1 MGPICRILGC SFLLLIAGLV PHHASRVVGL ESTCSQEQFR CGNGKCIPRR WVCDRENDCA 60
61 DGSDESTSQC RGLCSSLMFM CKNGEQCIHR EFMCDGDQDC RDGSDELECG NRTCRSDEFT 120
121 CGNGRCIQNR FKCDDDDDCG DGSDEKNCGE KAKCGSNFFA CKSGPCIPNQ WVCDGDSDCR 180
181 NGEDEMQNCT VSLLNFCQAG EFQCSDRITC LHKSWVCDGE ADCPDGEDES QSNCLKVSCR 240
241 PDQFQCNDQS CIAGHLTCNG KRDCADGSDE IMCDISATPR TCNATTEFDC GGGLCIPNAK 300
301 VCNRRKDCPN GEDEPAGKCG INECSSKNGG CMHQCVNLEV GYRCECHDGY KLGADQHTCV 360
361 DIDECETPGI CSQVCVNEIG AFKCECEAGY MRLLKNHTRC KASEGHASLL LARRHDIRKI 420
421 ALDRPEMTSI VNSTKAATAL DFVFRTGMIF WSDVATQSIY KAPIDEGNDR TVVLTKSSVT 480
481 SDGLAVDWIY NHVYFTDTHK CTIELTNFEG SMGKVLVKDS LDIPRSIALD PIEGWMYWSD 540
541 WGASPRIERA GMDGTHRTAI ITYDVKWPNG ITLDLVQKRL YWVDGKLNTI SSSNYDGSQR 600
601 HQVLYSGEYL RHPFSITTFE DYVYWTDWDK QAVFKANKFN GMDVEPVTAT HMLEHPMVVH 660
661 VYHPYRQPDG VNHCQSVNGH CSHLCLPAPR INERSPRISC ACPTGLKLMP DGLMCVED
|
| Detection Method: |  |
| Confidence: | 131.0 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| very-low-density lipoprotein binding | 7.75680908341624 | bayes_pls_golite062009 |
| very-low-density lipoprotein receptor activity | 7.75680908341624 | bayes_pls_golite062009 |
| low-density lipoprotein binding | 6.26591728596226 | bayes_pls_golite062009 |
| receptor activity | 5.18957329214193 | bayes_pls_golite062009 |
| transmembrane receptor activity | 5.12821337870369 | bayes_pls_golite062009 |
| receptor binding | 4.60755835611133 | bayes_pls_golite062009 |
| lipoprotein binding | 4.14588039269064 | bayes_pls_golite062009 |
| ErbB-2 class receptor binding | 4.1172010378646 | bayes_pls_golite062009 |
| growth factor activity | 3.72526290796901 | bayes_pls_golite062009 |
| low-density lipoprotein receptor activity | 3.65371958920557 | bayes_pls_golite062009 |
| lipoprotein receptor binding | 3.5371428063122 | bayes_pls_golite062009 |
| ErbB-3 class receptor binding | 3.52219710022937 | bayes_pls_golite062009 |
| lipoprotein receptor activity | 3.27342368855237 | bayes_pls_golite062009 |
| apolipoprotein binding | 3.15697162337516 | bayes_pls_golite062009 |
| heparin binding | 3.15251810133854 | bayes_pls_golite062009 |
| binding | 2.97929690141955 | bayes_pls_golite062009 |
| transcription regulator activity | 2.16844098063599 | bayes_pls_golite062009 |
| sterol transporter activity | 2.16184949636569 | bayes_pls_golite062009 |
| protein binding | 1.97546801934296 | bayes_pls_golite062009 |
| lipid transporter activity | 1.91872326766441 | bayes_pls_golite062009 |
| lipoprotein transporter activity | 1.72944996169507 | bayes_pls_golite062009 |
| transcription factor binding | 1.71838409809333 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 1.68241417866789 | bayes_pls_golite062009 |
| molecular transducer activity | 1.66401431847753 | bayes_pls_golite062009 |
| signal transducer activity | 1.66401431847753 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.61057978332614 | bayes_pls_golite062009 |
| high-density lipoprotein binding | 1.52515316728946 | bayes_pls_golite062009 |
| epidermal growth factor receptor binding | 1.45792086043869 | bayes_pls_golite062009 |
| transporter activity | 1.44005597324471 | bayes_pls_golite062009 |
| collagen binding | 1.3611207932336 | bayes_pls_golite062009 |
| protein transporter activity | 1.27232657510644 | bayes_pls_golite062009 |
| pattern binding | 1.26957983931218 | bayes_pls_golite062009 |
| polysaccharide binding | 1.11978732751628 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.08803800589535 | bayes_pls_golite062009 |
| protein kinase activity | 1.00235965838736 | bayes_pls_golite062009 |
| apolipoprotein E binding | 0.845204752730401 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.741912411452008 | bayes_pls_golite062009 |
| carbohydrate binding | 0.72748768329894 | bayes_pls_golite062009 |
| kinase activity | 0.692244195382463 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.67022333774569 | bayes_pls_golite062009 |
| extracellular matrix structural constituent | 0.66981956037474 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 0.44857826904729 | bayes_pls_golite062009 |
| extracellular matrix binding | 0.3265100728106 | bayes_pls_golite062009 |
|
Region A: Residues: [719-826] |
1 11 21 31 41 51
| | | | | |
1 LETKTGNNRT DTSNQVHKSD AESENDYVEI ALHVIASLAG TALVASVIYV VYRRCTRAVN 60
61 SMNFENPVYH KTTEDHFSLE KNGTPHIYAA ANDEEAVNPL FKSGTECV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
