Protein: | nAcRbeta-96A-PA |
Organism: | Drosophila melanogaster |
Length: | 519 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nAcRbeta-96A-PA.
Description | E-value | Query Range |
Subject Range |
|
458.0 | [0..20] | [519..1] |
Region A: Residues: [1-342] |
1 11 21 31 41 51 | | | | | | 1 MWHWSLLCVF LLVPLANSTA PISFEANPDT KRLYDDLLSN YNRLIRPVVN NTETLTVWLG 60 61 LKLSQLIEVN LKNQVMTTNL WVKQRWFDYK LRWDPEEYGG VEQLYVPSEH IWVPDIVLYN 120 121 NWDGNYEVTL MTKATLKYTG EVFWEPPAIY KSSCEMNVEY FPYDEQICFM KFGSWTYNGA 180 181 QVDLKHLDQI PGSNLVQVGI DLTEFYLSVE WDILEVPATK NEEYYPDTLE PFSDITFKLT 240 241 MRRKTLFYTV NLIVPCVALT FLTVLVFYLP SDSGEKVTLC ISILVSLTVF FLLLAEIIPP 300 301 TSLAVPLLGK YLLFTMILVS LSVWTTVCVL NIHFRSPSTH NM |
Detection Method: | |
Confidence: | 80.69897 |
Match: | 2bg9A |
Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [343-519] |
1 11 21 31 41 51 | | | | | | 1 SPLVRKLFLH FMPKLMMMRR TQYTLPDYDD STPSNGYTNE IDVRDSISDF PSEFKDSQDG 60 61 AYDNGMQNSV DSDNVIPRNL TPEVLQALRA VRFIAQHIKD ADKDNEIVED WKFVSMVLDR 120 121 FFLWLFTLSC VFGTLAIICQ SPSLYDTRSP IDRQLSEIPL RKNNFMLPPD IVRQVLT |
Detection Method: | |
Confidence: | 44.39794 |
Match: | 1oedB |
Description: | Acetylcholine receptor protein, beta chain |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
acetylcholine binding | 13.9752632471881 | bayes_pls_golite062009 |
acetylcholine receptor activity | 13.7533645836795 | bayes_pls_golite062009 |
nicotinic acetylcholine-activated cation-selective channel activity | 13.1511875247796 | bayes_pls_golite062009 |
metal ion transmembrane transporter activity | 11.9525876011069 | bayes_pls_golite062009 |
extracellular ligand-gated ion channel activity | 11.7813202122163 | bayes_pls_golite062009 |
excitatory extracellular ligand-gated ion channel activity | 11.7813202122163 | bayes_pls_golite062009 |
cation channel activity | 11.7442066737514 | bayes_pls_golite062009 |
ion channel activity | 11.1753684044644 | bayes_pls_golite062009 |
passive transmembrane transporter activity | 11.0903806681397 | bayes_pls_golite062009 |
channel activity | 11.0903806681397 | bayes_pls_golite062009 |
gated channel activity | 11.0397691626728 | bayes_pls_golite062009 |
substrate-specific channel activity | 10.9375522860542 | bayes_pls_golite062009 |
ligand-gated ion channel activity | 9.34902726749692 | bayes_pls_golite062009 |
ligand-gated channel activity | 9.34902726749692 | bayes_pls_golite062009 |
amine binding | 9.11982124959723 | bayes_pls_golite062009 |
chloride channel regulator activity | 9.10587892909341 | bayes_pls_golite062009 |
ion transmembrane transporter activity | 7.22265353460749 | bayes_pls_golite062009 |
cation transmembrane transporter activity | 7.19173677417054 | bayes_pls_golite062009 |
substrate-specific transmembrane transporter activity | 6.7875346065164 | bayes_pls_golite062009 |
transmembrane receptor activity | 5.4080353535498 | bayes_pls_golite062009 |
receptor activity | 5.11329651194787 | bayes_pls_golite062009 |
transporter activity | 5.11262082564788 | bayes_pls_golite062009 |
transmembrane transporter activity | 5.03439798256257 | bayes_pls_golite062009 |
substrate-specific transporter activity | 4.91314874981447 | bayes_pls_golite062009 |
neurotransmitter binding | 4.25797760547212 | bayes_pls_golite062009 |
neurotransmitter receptor activity | 4.15404686068319 | bayes_pls_golite062009 |
signal transducer activity | 4.12549692767753 | bayes_pls_golite062009 |
molecular transducer activity | 4.12549692767753 | bayes_pls_golite062009 |
adenylate cyclase binding | 3.30190657223613 | bayes_pls_golite062009 |
binding | 2.4916526322278 | bayes_pls_golite062009 |
beta-amyloid binding | 2.25766805801029 | bayes_pls_golite062009 |
GABA-A receptor activity | 2.17863682705001 | bayes_pls_golite062009 |
1.68370717591127 | bayes_pls_golite062009 | |
channel regulator activity | 1.66978990310631 | bayes_pls_golite062009 |
protein binding | 1.45740893920165 | bayes_pls_golite062009 |
G-protein coupled receptor activity | 1.42422063123689 | bayes_pls_golite062009 |
serotonin binding | 1.33584589886834 | bayes_pls_golite062009 |
serotonin-activated cation-selective channel activity | 1.31324203158511 | bayes_pls_golite062009 |
toxin binding | 1.03329843925063 | bayes_pls_golite062009 |
drug binding | 0.64715018605883 | bayes_pls_golite062009 |
kinase binding | 0.365355763029699 | bayes_pls_golite062009 |
protein kinase binding | 0.350601457777817 | bayes_pls_golite062009 |