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View Structure Prediction Details

Protein: CG10069-PB
Organism: Drosophila melanogaster
Length: 566 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG10069-PB.

Description E-value Query
Range
Subject
Range
gi|70725707, gi|... - gi|70725707|ref|YP_252621.1| hypothetical protein SH0706 [Staphylococcus haemolyticus JCSC1435], gi|...
255.0 [0..7] [534..91]

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Predicted Domain #1
Region A:
Residues: [1-566]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTSEQKSSW HYSQPKRIRE PSHLDEQHLH LAHCPRRSMR ASLGLGRTRK MSNNYNDVPF  60
   61 GIRAVQRLSR QCCTRFHARR DLLYKMSVFV LTFLAYACYH MCRKPISVVK SVLQGNCSTA 120
  121 LAASGQDCGY APFDVPDATT LFGMLDSAFL FSYAIAMFAS GFVAERVSLR YFLSMGMILT 180
  181 GVFTYMFGIA RTSNIHSLWY FIIVQIFAGI FQTTGWPGVV ALVGRWFGKS KRGLIFGIWN 240
  241 SHTSIGNILG TLIAAHYVES DWALSFVVPG IIIAAVGFLL FLFLVDQPEI VGCYPQAGQH 300
  301 ERRVANESDV EQDDEEQVRH NDAEINYRSA PTERTPILPR SQPEAVPRGR GRPISLIDAL 360
  361 FIPGVVEFSL CLFFTKLVSY TFMYWLPLYI QKSSTLGPEL SADLSTLFDV GGILGAIAAG 420
  421 YLSDVSGMSA TVCTGMLFVA SPILLMYQQY GALSMTISIV LLIVVGIFVN GPYALITTSV 480
  481 SAELGQHSSL EGNANALATV TAIIDGTGSI GAAVGPLLAG LISTAGWQYV FHMLIAADII 540
  541 AMVLLGRLVF KEFAALRRAS HRIRIE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.30103
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
glycerol transmembrane transporter activity 7.11654923455995 bayes_pls_golite062009
alcohol transmembrane transporter activity 6.7545566917184 bayes_pls_golite062009
polyol transmembrane transporter activity 6.7545566917184 bayes_pls_golite062009
glycerol-3-phosphate transmembrane transporter activity 6.56587510931539 bayes_pls_golite062009
transporter activity 4.09176719149278 bayes_pls_golite062009
substrate-specific transporter activity 3.59744164024479 bayes_pls_golite062009
transmembrane transporter activity 3.5865018981083 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 3.54194478414824 bayes_pls_golite062009
ion transmembrane transporter activity 2.21266150105753 bayes_pls_golite062009
cation transmembrane transporter activity 1.79369588808394 bayes_pls_golite062009
active transmembrane transporter activity 1.59419818573076 bayes_pls_golite062009
secondary active transmembrane transporter activity 1.22264637452409 bayes_pls_golite062009
binding 0.805286077372817 bayes_pls_golite062009
symporter activity 0.74591237387473 bayes_pls_golite062009
solute:cation symporter activity 0.74591237387473 bayes_pls_golite062009
cation:sugar symporter activity 0.143419068761182 bayes_pls_golite062009
sugar:hydrogen symporter activity 0.143419068761182 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle