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View Structure Prediction Details

Protein: loopin-1-PA, loo...
Organism: Drosophila melanogaster
Length: 526 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for loopin-1-PA, loo....

Description E-value Query
Range
Subject
Range
AMPA_VIBVY - Probable cytosol aminopeptidase OS=Vibrio vulnificus (strain YJ016) GN=pepA PE=3 SV=1
AMPA_VIBVU - Probable cytosol aminopeptidase OS=Vibrio vulnificus GN=pepA PE=3 SV=1
AMPA_VIBVU - Probable cytosol aminopeptidase OS=Vibrio vulnificus (strain CMCP6) GN=pepA PE=3 SV=1
591.0 [0..20] [525..2]

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Predicted Domain #1
Region A:
Residues: [1-526]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSYKNMSLV RAGLRMVRQN RSGQSVIPSY RRYATSCKSP KGVVVGVYTK DGDKPSKTTA  60
   61 NAVTLDDALG GKLLTLIRER GMDGTPGKGL LFSGFEGEYQ AVAVVGVGKQ GAAYNENEEL 120
  121 DEGMENVRVA AGTGARALQL QGMYEVHVDS MDYPEQAAEG AALAVWRYNA NKRKKNRIQT 180
  181 PKLDMYGKGD RDAWVRGLFK AESQNLARRL SDTPANMMTP SIFAQAAVDA LCPCGVSVEV 240
  241 RSMDWIEDMN LNSFLMIAKG SCEPPLLLEC SYCGTTPEDR PVLLLGQGLT FHSGGLCLKP 300
  301 KTGMDQYRGA MAGAAVCVGV LRAAAALSLP LNITAVMPLC EHMPSGMAVK CGDVVTLLNG 360
  361 TTMGIKNVDK APVVQLADPL LYAQATYKPK LVIDIGTVAM GVNYAVGGGA SGLWTTSKSV 420
  421 WQNFRKSGGL TGDRVWRFPL FKYYKQIVNK NITYDLCNTG RGPASSCLAA AILHTLVPCA 480
  481 EWAHLDIRGT GMTTTINPRP YLLKDSMTGR PTRTVIQFMY QMACSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 152.0
Match: 2ewbA
Description: No description for 2ewbA was found.

Predicted functions:

Term Confidence Notes
peptidase activity 3.26568153906254 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 2.98334117181651 bayes_pls_golite062009
metallopeptidase activity 2.06343447704714 bayes_pls_golite062009
binding 1.93664040569212 bayes_pls_golite062009
transcription regulator activity 1.62070628167746 bayes_pls_golite062009
exopeptidase activity 1.5759162922092 bayes_pls_golite062009
nucleic acid binding 1.19646763645944 bayes_pls_golite062009
DNA binding 1.19591446544558 bayes_pls_golite062009
carboxypeptidase activity 0.891655769761122 bayes_pls_golite062009
metalloexopeptidase activity 0.472688733072762 bayes_pls_golite062009
protein binding 0.4345997482448 bayes_pls_golite062009
hydrolase activity 0.367195794753195 bayes_pls_golite062009
metallocarboxypeptidase activity 0.180859448845431 bayes_pls_golite062009
catalytic activity 0.168716604730246 bayes_pls_golite062009
aminopeptidase activity 0.0966237570696103 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle