| Protein: | FBpp0297513, Rpn6-PB |
| Organism: | Drosophila melanogaster |
| Length: | 422 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0297513, Rpn6-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
259.0 | [0..1] | [422..214] |
|
Region A: Residues: [1-240] |
1 11 21 31 41 51
| | | | | |
1 MAGATLFERA QALSSVNREE QDSSLLNKLV RDQEGAENDE ERIRIKEQGI LQQGELYKQE 60
61 GKAKELADLI KVTRPFLSSI SKAKAAKLVR SLVDMFLDMD AGTGIEVQLC KDCIEWAKQE 120
121 KRTFLRQSLE ARLIALYFDT ALYTEALALG AQLLRELKKL DDKNLLVEVQ LLESKTYHAL 180
181 SNLPKARAAL TSARTTANAI YCPPKVQGAL DLQSGILHAA DERDFKTAFS YFYEAFEGFD 240
241
|
| Detection Method: |  |
| Confidence: | 10.0 |
| Match: | 2fo7A |
| Description: | Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [241-304] |
1 11 21 31 41 51
| | | | | |
1 SVDSVKALTS LKYMLLCKIM LGQSDDVNQL VSGKLAITYS GRDIDAMKSV AEASHKRSLA 60
61 DFQA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [305-422] |
1 11 21 31 41 51
| | | | | |
1 ALKEYKKELA EDVIVQAHLG TLYDTMLEQN LCRIIEPYSR VQVAHVAESI QLPMPQVEKK 60
61 LSQMILDKKF SGILDQGEGV LIVFEETPVD KTYERVLETI QSMGKVVDTL YQKAKKLS
|
| Detection Method: | |
| Confidence: | 8.522879 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.50995556050336 | bayes_pls_golite062009 |
| nucleic acid binding | 3.38144578566524 | bayes_pls_golite062009 |
| binding | 3.33026160538031 | bayes_pls_golite062009 |
| DNA binding | 3.30822066787723 | bayes_pls_golite062009 |
| transcription factor activity | 2.60537570879007 | bayes_pls_golite062009 |
| hydrolase activity | 2.30467124306022 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.46680509390433 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.32971938164691 | bayes_pls_golite062009 |
| transcription activator activity | 1.08566311616647 | bayes_pls_golite062009 |
| transcription repressor activity | 0.95491822926452 | bayes_pls_golite062009 |
| protein binding | 0.653872239015235 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.42135864069093 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.136726704233672 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.118016217031359 | bayes_pls_golite062009 |
