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View Structure Prediction Details

Protein: LvpD-PA
Organism: Drosophila melanogaster
Length: 567 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LvpD-PA.

Description E-value Query
Range
Subject
Range
gi|220933085, gi... - gi|89209664|ref|ZP_01188059.1| Alpha amylase, catalytic region [Halothermothrix orenii H 168], gi|89...
456.0 [0..24] [565..2]

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Predicted Domain #1
Region A:
Residues: [1-567]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKWAHLGLA ALLLISTTQE GTADIDWWEN ASLYQIYPRS FQDSDGDGIG DLKGITSRLG  60
   61 YLKEIGITAT WLSPIFTSPM SDFGYDISNF YDIDPIFGTL EDFDDLIVEA KSLGVKIILD 120
  121 FVPNHSSDEN VWFEKSVNRE DGYDDFYVWD DGKLNEETGA RDPPSNWVSV FSGPMWTWNE 180
  181 KRQQYFLHQF QVKQPDLNFT NPMVREHMLD VLKFWLDRGV DGFRIDAVPH IYEHRNADGS 240
  241 YPDEPVSGWG SDPNAYDYHD HIYTKDQPAT VDLMYEWREF LDNYRAQNGG DSRVLLAEAY 300
  301 SSVETLSAYF GNSTHQGTQL PMNFQLMYLS GYSTAKDVVG SIDYWMNTMW KEHQTANWVV 360
  361 GNHDTNRVAD RMGAHKVDLL NVIVNALPGA SVTYYGEEIG MSNVDVECTG DSCEDRDGER 420
  421 TPMQWTAGKN ADFSDGESTW LPLSPEYQRY NVQTERGVSR SSLNIFKGLQ ELKSSSAFLA 480
  481 FKEDGGFSYE AVTEQVLQII RTNKISEEYR ILVNMGNGME ILDGLAPKTY EYVLATAYST 540
  541 HYSGQKADLS QRIILMPYEA VVLRWLA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 126.0
Match: 1uokA
Description: CRYSTAL STRUCTURE OF B. CEREUS OLIGO-1,6-GLUCOSIDASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity, hydrolyzing O-glycosyl compounds 4.11319792356479 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 3.92012282533754 bayes_pls_golite062009
hydrolase activity 3.21770945631891 bayes_pls_golite062009
chitinase activity 2.45357334610104 bayes_pls_golite062009
structural molecule activity 2.28030619331997 bayes_pls_golite062009
trehalase activity 2.11042620996316 bayes_pls_golite062009
alpha-amylase activity 2.09193270404736 bayes_pls_golite062009
amylase activity 2.03484942782894 bayes_pls_golite062009
catalytic activity 1.85569074294201 bayes_pls_golite062009
alpha-glucosidase activity 0.96543619590958 bayes_pls_golite062009
glucosidase activity 0.766503513427695 bayes_pls_golite062009
hexosaminidase activity 0.763360027922833 bayes_pls_golite062009
binding 0.63693798355947 bayes_pls_golite062009
carbohydrate binding 0.4998423581103 bayes_pls_golite062009
maltase activity 0.442635030512661 bayes_pls_golite062009
sugar binding 0.36459095255871 bayes_pls_golite062009
transferase activity, transferring hexosyl groups 0.266938437560648 bayes_pls_golite062009
beta-N-acetylhexosaminidase activity 0.263065978664289 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle