YRC Public Data Repository - Protein Structure Prediction

Protein:	Porin2-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Porin2-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|114619980 - gi\|114619980\|ref\|XP_001138480.1\| PREDICTED: similar to voltage dependent anion channel form 3 [Pan t...	335.0	[0..4]	[292..290]
VDAC2 - voltage-dependent anion channel 2	333.0	[0..5]	[290..30]
gi\|109078605 - gi\|109078605\|ref\|XP_001107652.1\| PREDICTED: voltage-dependent anion channel 1 isoform 2 [Macaca mula...	332.0	[0..3]	[292..2]
VDAC2_MOUSE - Voltage-dependent anion-selective channel protein 2 OS=Mus musculus GN=Vdac2 PE=1 SV=2 gi\|53733651 - gb\|AAH83965.1\| Unknown (protein for MGC:98006) [Xenopus laevis]	332.0	[0..5]	[292..16]
gi\|149726367 - gi\|149726367\|ref\|XP_001504459.1\| PREDICTED: similar to voltage-dependent anion channel 1 [Equus caba... VDAC1_RABIT - Voltage-dependent anion-selective channel protein 1 OS=Oryctolagus cuniculus GN=VDAC1 PE=2 SV=3 VDAC1_BOVIN - Voltage-dependent anion-selective channel protein 1 OS=Bos taurus GN=VDAC1 PE=1 SV=3 gi\|57093539 - gi\|57093539\|ref\|XP_531907.1\| PREDICTED: similar to Voltage-dependent anion-selective channel protein...	331.0	[0..3]	[292..2]
VDAC2_RAT - Voltage-dependent anion-selective channel protein 2 OS=Rattus norvegicus GN=Vdac2 PE=1 SV=2	331.0	[0..5]	[292..16]
VDAC1_PIG - Voltage-dependent anion-selective channel protein 1 OS=Sus scrofa GN=VDAC1 PE=2 SV=3	331.0	[0..3]	[292..2]

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Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKTPTYPD LGKLARDLFK RGYHPGIWQI DCKTLTNSGI EFFTTGFASQ DNSKVTGSLQ  60
   61 SKYKIEDQGL TLTERWNTEN WLFGEIMHRD KLAQGLMLAV EAKFQPGSNE ADGKFKMGYA 120
  121 QDNFNFLADI GLNSEPILNC SLVVGHKEFL GGVGTEFDVG NTELKGWKVA LGWTNETATL 180
  181 HGELKNGDTW LASLFYKASE KIDAGIEVTK GAGGGEAAEG EQQGGDVVVN LGMIYHLEED 240
  241 ALVRAKVNNL VELGLGYEQK LRDGITASIS AVLDCNNFKD GNHRFGVGIA LQC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.958
Match:	2ge4A
Description:	No description for 2ge4A was found.

Predicted functions:

Term	Confidence	Notes
channel activity	4.42063230929782	bayes_pls_golite062009
passive transmembrane transporter activity	4.42063230929782	bayes_pls_golite062009
wide pore channel activity	3.23380189399278	bayes_pls_golite062009
porin activity	3.07546403538822	bayes_pls_golite062009
transporter activity	2.79333283601576	bayes_pls_golite062009
transmembrane transporter activity	2.67610270255307	bayes_pls_golite062009
signal transducer activity	2.40233759168714	bayes_pls_golite062009
molecular transducer activity	2.40233759168714	bayes_pls_golite062009
receptor activity	2.38771290025999	bayes_pls_golite062009
binding	1.39766737580326	bayes_pls_golite062009
protein binding	0.709353859897791	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: