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View Structure Prediction Details

Protein: RBM8A_RAT
Organism: Rattus norvegicus
Length: 174 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBM8A_RAT.

Description E-value Query
Range		 Subject
Range
gi|83853808 - gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
 1.0E-35 [1..167] [235..399]
PABP8_ARATH - Polyadenylate-binding protein 8 OS=Arabidopsis thaliana GN=PAB8 PE=1 SV=1
 6.0E-35 [1..167] [256..420]
gi|7673355 - gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
 3.0E-34 [1..167] [238..402]
gi|13560783 - gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
 6.0E-34 [1..167] [251..415]
gi|76689281 - gi|76689281|ref|XP_881384.1| PREDICTED: similar to Polyadenylate-binding protein 4 (Poly(A)-binding ...
 9.0E-34 [1..171] [223..393]
gi|114649030 - gi|114649030|ref|XP_001154480.1| PREDICTED: similar to PABP3 isoform 4 [Pan troglodytes]
 1.0E-33 [3..173] [123..280]
gi|55959650 - gi|55959650|emb|CAI16425.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Homo sapiens]
 2.0E-33 [1..171] [2..169]

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Predicted Domain #1
Region A:
Residues: [1-174] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVLDLHEA GGEDFAMDED GDESIHKLKE KAKKRKGRGF GSEEGSRARM REDYDSVEQD  60
   61 GDEPGPQRSV EGWILFVTGV HEEATEEDIH DKFAEYGEIK NIHLNLDRRT GYLKGYTLVE 120
  121 YETYKEAQAA MEGLNGQDLM GQPISVDWCF VRGPPKGKRR GGRRRSRSPD RRRR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.69897
Match: 1hl6A
Description: CG8781 protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
RNA binding 5.15097136329571 bayes_pls_golite062009
mRNA binding 4.05281507540116 bayes_pls_golite062009
nucleic acid binding 3.81920018903278 bayes_pls_golite062009
3.6767428476083 bayes_pls_golite062009
binding 3.64400841800969 bayes_pls_golite062009
poly-pyrimidine tract binding 1.69629099229571 bayes_pls_golite062009
single-stranded RNA binding 1.46469774223879 bayes_pls_golite062009
protein binding 1.12215421354121 bayes_pls_golite062009
transcription regulator activity 1.07788694919471 bayes_pls_golite062009
snRNA binding 1.06008352183728 bayes_pls_golite062009
DNA binding 0.978604858165557 bayes_pls_golite062009
transporter activity 0.628672636801176 bayes_pls_golite062009
mRNA 3'-UTR binding 0.591700155096213 bayes_pls_golite062009
transmembrane transporter activity 0.505106991526286 bayes_pls_golite062009
cytoskeletal protein binding 0.288834004308736 bayes_pls_golite062009
transcription factor activity 0.234742017105535 bayes_pls_golite062009
substrate-specific transporter activity 0.182749906784328 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.096231856558874 bayes_pls_golite062009
pyrophosphatase activity 0.059732432409948 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.0510390778764699 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.0484248928275733 bayes_pls_golite062009
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