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View Structure Prediction Details

Protein: NCBP2_RAT
Organism: Rattus norvegicus
Length: 156 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NCBP2_RAT.

Description E-value Query
Range		 Subject
Range
gi|110749772 - gi|110749772|ref|XP_394166.3| PREDICTED: similar to found in neurons CG4396-PA [Apis mellifera]
 147.0 [0..23] [156..10]
gi|94373120 - gi|94373120|ref|XP_982196.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein A3 [Mus m...
 147.0 [0..31] [156..26]
gi|89266927 - gi|89266927|emb|CAJ82281.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen ...
 146.0 [0..27] [156..54]
gi|114624146 - gi|114624146|ref|XP_520515.2| PREDICTED: similar to ELAV (embryonic lethal, abnormal vision, Drosoph...
 146.0 [0..27] [156..168]
gi|55957843 - gi|55957843|emb|CAI13378.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen ...
ENSMMUT000000140... - null, null
ENSPTRT00000038537 - null
ENSCJAT00000015741 - null
 146.0 [0..27] [156..54]
gi|73971075 - gi|73971075|ref|XP_865116.1| PREDICTED: similar to ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-li...
 146.0 [0..27] [156..26]
ENSOCUP00000005104 - pep:novel chromosome:oryCun2:1:29874239:29957047:1 gene:ENSOCUG00000005891 transcript:ENSOCUT0000000...
gi|55731642 - gi|55731642|emb|CAH92527.1| hypothetical protein [Pongo abelii]
gi|207080284 - gi|207080284|ref|NP_001128867.1| DKFZP459N111 protein [Pongo abelii]
tr|A0A0A0MRX1|A0... - ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=4 SV=1
 146.0 [0..27] [156..55]
gi|62739311 - gi|62739311|gb|AAH94189.1| Elavl2-a protein [Xenopus laevis]
 145.0 [0..27] [156..24]

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Predicted Domain #1
Region A:
Residues: [1-156] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGLLKALR SDSYVELSEY RDQHFRGDNE EQEKLLKKSC TLYVGNLSFY TTEEQIYELF  60
   61 SKSGDIKKII MGLDKMKKTA CGFCFVEYYS RADAENAMRY INGTRLDDRI IRTDWDAGFK 120
  121 EGRQYGRGRS GGQVRDEYRE DYDAGRGGYG KLAQKQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.0
Match: 1h2tZ
Description: CBP20, 20KDa nuclear cap-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
RNA binding 6.73097473547076 bayes_pls_golite062009
6.62953239642182 bayes_pls_golite062009
RNA cap binding 5.43390507836051 bayes_pls_golite062009
mRNA binding 5.29759606920196 bayes_pls_golite062009
nucleic acid binding 3.81920018903278 bayes_pls_golite062009
binding 3.64400841800969 bayes_pls_golite062009
snRNA binding 3.28448936696877 bayes_pls_golite062009
poly-pyrimidine tract binding 3.11990160533699 bayes_pls_golite062009
single-stranded RNA binding 2.93798024346416 bayes_pls_golite062009
U1 snRNA binding 2.26303528058407 bayes_pls_golite062009
structural molecule activity 1.29928829870122 bayes_pls_golite062009
protein binding 1.12215421354121 bayes_pls_golite062009
transcription regulator activity 1.07788694919471 bayes_pls_golite062009
DNA binding 0.978604858165557 bayes_pls_golite062009
transporter activity 0.628672636801176 bayes_pls_golite062009
mRNA 3'-UTR binding 0.591700155096213 bayes_pls_golite062009
transmembrane transporter activity 0.505106991526286 bayes_pls_golite062009
transcription factor activity 0.234742017105535 bayes_pls_golite062009
substrate-specific transporter activity 0.182749906784328 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.096231856558874 bayes_pls_golite062009
pyrophosphatase activity 0.059732432409948 bayes_pls_golite062009
snoRNA binding 0.0568636182001701 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.0510390778764699 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.0484248928275733 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle