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View Structure Prediction Details

Protein: AMPD_SCHPO
Organism: Schizosaccharomyces pombe 972h-
Length: 846 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMPD_SCHPO.

Description E-value Query
Range
Subject
Range
gi|995562 - gi|995562|emb|CAA62797.1| AMP deaminase [Schizosaccharomyces pombe]
998.0 [0..80] [846..1]
AMPD2 - adenosine monophosphate deaminase 2 (isoform L)
934.0 [0..12] [784..84]
gi|109013244 - gi|109013244|ref|XP_001093312.1| PREDICTED: adenosine monophosphate deaminase 2 (isoform L) isoform ...
934.0 [0..12] [784..84]
AMPD2_RAT - AMP deaminase 2 OS=Rattus norvegicus GN=Ampd2 PE=1 SV=2
925.0 [0..12] [783..29]

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Predicted Domain #1
Region A:
Residues: [1-774]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVRPLSLCG LLPAEMNMEQ EDDQVPAVAA ETVPLKRYVT NPGANRDEEV AAAPSSQDTP  60
   61 YFDYAYERSL RHQDAKFLAM NGTQNGRDGL PSKSPRRPSV SASTVRNSDD VNHSKAGPGS 120
  121 GKLLNDTLQS KISSIHMPHV QQGDNAVVSS VGGPETDPGN METTDPLFSD ELAEIYLSIH 180
  181 KCMDMRHKYI RVSLQGELDN PIDDDSWIIY PDCKEGEDDT GLFNFADCKI PGIENEMEYH 240
  241 MDHQGIFQVY ENDSAYIAGT PSFHIPTIRD YYIDLEFLLS ASSDGPSKSF SFRRLQYLEG 300
  301 RWNMYMLLNE YQELADTKKV PHRDFYNVRK VDTHVHHSAL ANQKHLLRFI KAKLRKCPNE 360
  361 KVIWRDGKFL TLQEVFDSLK LTSYDLSIDT LDMHAHTDTF HRFDKFNLKY NPIGESRLRT 420
  421 IFLKTDNDIN GRYLAELTKE VFTDLRTQKY QMAEYRISIY GRNREEWDKL AAWIIDNELF 480
  481 SPNVRWLIQV PRLYDVYKKS GIVETFEEVV RNVFEPLFEV TKDPRTHPKL HVFLQRVIGF 540
  541 DSVDDESKPE RRTFRKFPYP KHWDINLNPP YSYWLYYMYA NMTSLNSWRK IRGFNTFVLR 600
  601 PHCGEAGDTD HLASAFLLSH GINHGILLRK VPFLQYLWYL DQIPIAMSPL SNNALFLAYD 660
  661 KNPFLTYFKR GLNVSLSTDD PLQFAFTREP LIEEYAVAAQ IYKLSAVDMC ELARNSVLQS 720
  721 GFERQLKERW LGVDFQDIDR TNVPIIRLAY RALTLTQEIA LVNKHVQPSK HPSN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2a3lA
Description: X-Ray Structure of Adenosine 5'-Monophosphate Deaminase from Arabidopsis Thaliana in Complex with Coformycin 5'-Phosphate
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.70199291046899 bayes_pls_golite062009
hydrolase activity 1.30610496460396 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 0.882933203153461 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides 0.248802326836448 bayes_pls_golite062009
dihydroorotase activity 0.203044795244555 bayes_pls_golite062009
deaminase activity 0.18698811376434 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 0.0954028693917728 bayes_pls_golite062009
binding 0.014147565583623 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [775-846]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HDLEELIHKY DAMTGTSDPL SASPRTNDAT ISSRLSLHDG HDHGAFFPGL SVISERRRRK  60
   61 DSMASSSQDL KD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle