YRC Public Data Repository - Protein Structure Prediction

Protein:	TIM13_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM13_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|190406804 - gi\|190406804\|gb\|EDV10071.1\| mitochondrial import inner membrane translocase subunit TIM13 [Saccharom... TIM13 - Mitochondrial intermembrane space protein, forms a complex with Tim8p that delivers a subset of hydr... TIM13_YEAST - Mitochondrial import inner membrane translocase subunit TIM13 OS=Saccharomyces cerevisiae (strain AT... gi\|151943459 - gi\|151943459\|gb\|EDN61770.1\| translocase of the inner membrane [Saccharomyces cerevisiae YJM789]	99.0	[0..1]	[93..1]
gi\|73955150 - gi\|73955150\|ref\|XP_854099.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	99.0	[0..11]	[90..167]
gi\|50766075 - gi\|50766075\|ref\|XP_422986.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	97.0	[0..22]	[94..123]
gi\|32411199, gi\|... - gi\|32411199\|ref\|XP_326080.1\| hypothetical protein [Neurospora crassa], gi\|28924727\|gb\|EAA33840.1\| hy... gi\|85109764 - gi\|85109764\|ref\|XP_963076.1\| hypothetical protein [Neurospora crassa OR74A]	94.0	[0..8]	[92..613]
TI13B_XENLA - Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevis GN=timm13-b PE=3 S...	94.0	[0..9]	[94..11]
gi\|89272450, gi\|... - gi\|89272450\|emb\|CAJ82383.1\| translocase of inner mitochondrial membrane 13 homolog a (yeast) [Xenopu...	94.0	[0..9]	[94..11]
TIM13_ASHGO - Mitochondrial import inner membrane translocase subunit TIM13 OS=Ashbya gossypii (strain ATCC 10895 ... TIM13_ASHGO - Mitochondrial import inner membrane translocase subunit TIM13 OS=Ashbya gossypii GN=TIM13 PE=3 SV=1	93.0	[0..1]	[93..1]
gi\|76660354 - gi\|76660354\|ref\|XP_600831.2\| PREDICTED: similar to translocase of inner mitochondrial membrane 8 hom...	93.0	[0..16]	[95..15]
gi\|47225684 - gi\|47225684\|emb\|CAG08027.1\| unnamed protein product [Tetraodon nigroviridis]	92.0	[0..2]	[94..3]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIFGGNSGN APSSEDKKSI FMKQIRQELA VAQAGELISK INENCFDKCI PEPGSTFDPN  60
   61 EKSCVSKCME RYMDAWNIVS RTYISRMQRE QKNLN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	2bskB
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein transporter activity	3.96569591038426	bayes_pls_golite062009
transporter activity	3.42555440535265	bayes_pls_golite062009
protein transmembrane transporter activity	3.05578860381335	bayes_pls_golite062009
P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.52072322460318	bayes_pls_golite062009
macromolecule transmembrane transporter activity	2.52072322460318	bayes_pls_golite062009
binding	2.38169553639759	bayes_pls_golite062009
substrate-specific transporter activity	2.26454691978513	bayes_pls_golite062009
transmembrane transporter activity	2.01475009173074	bayes_pls_golite062009
protein binding	1.54231655177329	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.5410808613005	bayes_pls_golite062009
unfolded protein binding	0.0997632819038001	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: