YRC Public Data Repository - Protein Structure Prediction

Protein:	CAT5
Organism:	Saccharomyces cerevisiae
Length:	233 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAT5.

Description	E-value	Query Range	Subject Range
COQ7_YEAST - 5-demethoxyubiquinone hydroxylase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S... gi\|151945746 - gi\|151945746\|gb\|EDN63987.1\| catabolite repression protein [Saccharomyces cerevisiae YJM789] CAT5 - Protein required for ubiquinone (Coenzyme Q) biosynthesis; localizes to the matrix face of the mitoc...	4.0E-84	[1..233]	[1..233]
orf19.1940, orf1... - orf19.1940 CGDID:CAL0002581 Assembly 19, Contig19-10137 (23331, 24071) CDS, translated using codon t... gi\|68480635, gi\|... - gi\|68480760\|ref\|XP_715646.1\| hypothetical protein CaO19.9495 [Candida albicans SC5314], gi\|68480635\|...	1.0E-73	[1..233]	[1..246]
gi\|44981244 - gi\|44981244\|gb\|AAS51066.1\| ACL162Cp [Ashbya gossypii ATCC 10895] gi\|44981244, gi\|... - gi\|45185526\|ref\|NP_983242.1\| ACL162Cp [Ashbya gossypii ATCC 10895], gi\|44981244\|gb\|AAS51066.1\| ACL16...	3.0E-73	[13..233]	[12..226]
COQ7-PA - The gene COQ7 is referred to in FlyBase by the symbol Dmel\COQ7 (CG14437, FBgn0029502). It is a prot...	2.0E-72	[4..233]	[6..219]
gi\|42547301, gi\|... - gi\|46136805\|ref\|XP_390094.1\| hypothetical protein FG09918.1 [Gibberella zeae PH-1], gi\|42547301\|gb\|E...	1.0E-69	[18..229]	[27..238]
COQ7_MOUSE - 5-demethoxyubiquinone hydroxylase, mitochondrial OS=Mus musculus GN=Coq7 PE=1 SV=3	4.0E-69	[44..232]	[41..216]
gi\|3811295 - gi\|3811295\|gb\|AAC69451.1\| timing protein CLK-1; ubiquinone biosynthesis protein COQ7 [Homo sapiens]	2.0E-68	[44..233]	[3..179]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRVSVFKP ASRGFSVLSS LKITEHTSAK HTEKPEHAPK CQNLSDAQAA FLDRVIRVDQ  60
   61 AGELGADYIY AGQYFVLAHR YPHLKPVLKH IWDQEIHHHN TFNNLQLKRR VRPSLLTPLW 120
  121 KAGAFAMGAG TALIS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	57.113509
Match:	PF03232.3
Description:	No description for PF03232.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.54239919926847	bayes_pls_golite062009
binding	2.15097517783454	bayes_pls_golite062009
nucleic acid binding	0.289249271377329	bayes_pls_golite062009
protein binding	0.222916509072005	bayes_pls_golite062009
catalytic activity	0.219299244701657	bayes_pls_golite062009
DNA binding	0.160477208079303	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [136-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEAAMACTEA VETVIGGHYN GQLRNLANQF NLERTDGTKG PSEEIKSLTS TIQQFRDDEL  60
   61 EHLDTAIKHD SYMAVPYTVI TEGIKTICRV AIWSAERI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.853872
Match:	PF03232.3
Description:	No description for PF03232.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: