| Protein: | SWH1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1188 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWH1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1188] | [1..1188] |
|
|
0.0 | [20..1188] | [121..1243] |
|
|
0.0 | [267..1188] | [10..950] |
|
|
0.0 | [18..1188] | [151..1235] |
|
|
0.0 | [267..1188] | [10..950] |
|
|
0.0 | [15..1188] | [152..1266] |
|
Region A: Residues: [1-392] |
1 11 21 31 41 51
| | | | | |
1 MEQPDLSSVA ISKPLLKLKL LDALRQGSFP NLQDLLKKQF QPLDDPNVQQ VLHLMLHYAV 60
61 QVAPMAVIKE IVHHWVSTTN TTFLNIHLDL NERDSNGNTP LHIAAYQSRG DIVAFLLDQP 120
121 TINDCVLNNS HLQAIEMCKN LNIAQMMQVK RSTYVAETAQ EFRTAFNNRD FGHLESILSS 180
181 PRNAELLDIN GMDPETGDTV LHEFVKKRDV IMCRWLLEHG ADPFKRDRKG KLPIELVRKV 240
241 NENDTATSTK IAIDIELKKL LERATREQSV IDVTNNNLHE APTYKGYLKK WTNFAQGYKL 300
301 RWFILSSDGK LSYYIDQADT KNACRGSLNM SSCSLHLDSS EKLKFEIIGG NNGVIRWHLK 360
361 GNHPIETNRW VWAIQGAIRY AKDREILLHN GP
|
| Detection Method: |  |
| Confidence: | 60.0 |
| Match: | 1n11A_ |
| Description: | Ankyrin-R |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.46128459961519 | bayes_pls_golite062009 |
| protein binding | 1.6716587413544 | bayes_pls_golite062009 |
| transporter activity | 1.62618963155033 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.36262284136123 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.970617674606391 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.786064957992193 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.370811261525551 | bayes_pls_golite062009 |
| transcription regulator activity | 0.271428013908666 | bayes_pls_golite062009 |
| nucleic acid binding | 0.106792084948545 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.0888208413153098 | bayes_pls_golite062009 |
|
Region A: Residues: [393-518] |
1 11 21 31 41 51
| | | | | |
1 YSPSLALSHG LSSKVSNKEN LHATSKRLTK SPHLSKSTLT QNDHDNDDDS TNNNNNKSNN 60
61 DYDDNNNNNN NDDDDYDDDD ESRPLIEPLP LISSRSQSLS EITPGPHSRK STVSSTRAAD 120
121 IPSDDE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [519-580] |
1 11 21 31 41 51
| | | | | |
1 GYSEDDSDDD GNSSYTMENG GENDGDEDLN AIYGPYIQKL HMLQRSISIE LASLNELLQD 60
61 KQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [581-724] |
1 11 21 31 41 51
| | | | | |
1 QHDEYWNTVN TSIETVSEFF DKLNRLTSQR EKRMIAQMTK QRDVNNVWIQ SVKDLEMELV 60
61 DKDEKLVALD KERKNLKKML QKKLNNQPQV ETEANEESDD ANSMIKGSQE STNTLEEIVK 120
121 FIEATKESDE DSDADEFFDA EEAA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [725-855] |
1 11 21 31 41 51
| | | | | |
1 SDKKANDSED LTTNKETPAN AKPQEEAPED ESLIVISSPQ VEKKNQLLKE GSFVGYEDPV 60
61 RTKLALDEDN RPKIGLWSVL KSMVGQDLTK LTLPVSFNEP TSLLQRVSED IEYSHILDQA 120
121 ATFEDSSLRM L
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| oxysterol binding | 5.62675037461468 | bayes_pls_golite062009 |
| sterol binding | 4.18891468109664 | bayes_pls_golite062009 |
| 3.02967613614595 | bayes_pls_golite062009 | |
| steroid binding | 2.54679035876403 | bayes_pls_golite062009 |
| binding | 2.38976505793668 | bayes_pls_golite062009 |
| phosphoinositide binding | 1.88386267925687 | bayes_pls_golite062009 |
| lipid binding | 1.8520231230392 | bayes_pls_golite062009 |
| phospholipid binding | 1.53854106315366 | bayes_pls_golite062009 |
| cholesterol binding | 0.644339278395346 | bayes_pls_golite062009 |
|
Region A: Residues: [856-961] |
1 11 21 31 41 51
| | | | | |
1 YVAAFTASMY ASTTNRVSKP FNPLLGETFE YARTDGQYRF FTEQVSHHPP ISATWTESPK 60
61 WDFYGECNVD SSFNGRTFAV QHLGLWYITI RPDHNISVPE ETYSWK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [962-1086] |
1 11 21 31 41 51
| | | | | |
1 KPNNTVIGIL MGKPQVDNSG DVKVTNHTTG DYCMLHYKAH GWTSAGAYEV RGEVFNKDDK 60
61 KLWVLGGHWN DSIYGKKVTA RGGELTLDRI KTANSATGGP KLDGSKFLIW KANERPSVPF 120
121 NLTSF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1087-1188] |
1 11 21 31 41 51
| | | | | |
1 ALTLNALPPH LIPYLAPTDS RLRPDQRAME NGEYDKAAAE KHRVEVKQRA AKKEREQKGE 60
61 EYRPKWFVQE EHPVTKSLYW KFNGEYWNKR KNHDFKDCAD IF
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
