YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL51
Organism:	Saccharomyces cerevisiae
Length:	140 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL51.

Description	E-value	Query Range	Subject Range
RM51_YEAST - 54S ribosomal protein L51, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|151942876 - gi\|151942876\|gb\|EDN61222.1\| mitochondrial ribosomal protein [Saccharomyces cerevisiae YJM789] MRPL51 - Mitochondrial ribosomal protein of the large subunit gi\|190408027 - gi\|190408027\|gb\|EDV11292.1\| 60S ribosomal protein L51, mitochondrial precursor [Saccharomyces cerevi...	6.0E-47	[1..140]	[1..140]
mrpl51 - mitochondrial ribosomal protein subunit L51 RM51_SCHPO - 54S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=m...	1.0E-39	[1..140]	[1..139]
MRPL43 - mitochondrial ribosomal protein L43	2.0E-39	[9..135]	[12..136]
mRpL43-PA - The gene mitochondrial ribosomal protein L43 is referred to in FlyBase by the symbol Dmel\mRpL43 (CG...	3.0E-39	[7..137]	[13..141]
gi\|85091765 - gi\|85091765\|ref\|XP_959062.1\| hypothetical protein NCU07549 [Neurospora crassa OR74A] gi\|32414711, gi\|... - gi\|32414711\|ref\|XP_327835.1\| hypothetical protein [Neurospora crassa], gi\|28920459\|gb\|EAA29826.1\| co...	3.0E-38	[1..133]	[1..132]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVKAIARNS IGRNGVGAFV FPCRKITLQF CNWGGSSEGM RKFLTSKRLD KWGQEFPWIQ  60
   61 FEVMRKSGHP LLRAEYTNGR EKVICVRNLN IDNVENKLKL LKDSDGDILR RRTKNDNVES 120
  121 LNSSVRGIWS PLHAAKRHRI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.75944406275714	bayes_pls_golite062009
NADH dehydrogenase activity	1.67491903098311	bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity	1.51076265708524	bayes_pls_golite062009
NADH dehydrogenase (quinone) activity	1.38563210321556	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	1.05291982801016	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	0.7678907195493	bayes_pls_golite062009
binding	0.680816432660797	bayes_pls_golite062009
catalytic activity	0.672192331361968	bayes_pls_golite062009
transcription regulator activity	0.364698672137451	bayes_pls_golite062009
protein binding	0.341730456502484	bayes_pls_golite062009
	0.0102370745096865	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: