| Protein: | HRP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 534 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HRP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [84..508] | [15..475] |
|
|
0.0 | [71..501] | [2..451] |
|
|
0.0 | [84..508] | [15..475] |
|
|
0.0 | [84..530] | [15..498] |
|
|
0.0 | [84..508] | [15..474] |
|
Region A: Residues: [1-58] |
1 11 21 31 41 51
| | | | | |
1 MSSDEEDFND IYGDDKPTTT EEVKKEEEQN KAGSGTSQLD QLAALQALSS SLNKLNNP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51665560478175 | bayes_pls_golite062009 |
| 4.45006565905155 | bayes_pls_golite062009 | |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 2.79052809544187 | bayes_pls_golite062009 |
| structural molecule activity | 2.78501986457503 | bayes_pls_golite062009 |
| transcription regulator activity | 1.7776932219095 | bayes_pls_golite062009 |
| DNA binding | 1.65208390030564 | bayes_pls_golite062009 |
| snRNA binding | 1.44241647066188 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| transcription factor activity | 0.795084003256395 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.304235325881492 | bayes_pls_golite062009 |
| U1 snRNA binding | 0.290135317640781 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
|
Region A: Residues: [59-152] |
1 11 21 31 41 51
| | | | | |
1 NSNNSSSNNS NQDTSSSKQD GTANDKEGSN EDTKNEKKQE SATSANANAN ASSAGPSGLP 60
61 WEQLQQTMSQ FQQPSSQSPP QQQVTQTKEE RSKA
|
| Detection Method: | |
| Confidence: | 167.39794 |
| Match: | 1cvjA_ |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [153-244] |
1 11 21 31 41 51
| | | | | |
1 DLSKESCKMF IGGLNWDTTE DNLREYFGKY GTVTDLKIMK DPATGRSRGF GFLSFEKPSS 60
61 VDEVVKTQHI LDGKVIDPKR AIPRDEQDKT GK
|
| Detection Method: | |
| Confidence: | 402.9794 |
| Match: | 2up1A_ |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51665560478175 | bayes_pls_golite062009 |
| 4.45006565905155 | bayes_pls_golite062009 | |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 2.79052809544187 | bayes_pls_golite062009 |
| structural molecule activity | 2.78501986457503 | bayes_pls_golite062009 |
| transcription regulator activity | 1.7776932219095 | bayes_pls_golite062009 |
| DNA binding | 1.65208390030564 | bayes_pls_golite062009 |
| snRNA binding | 1.44241647066188 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| transcription factor activity | 0.795084003256395 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.304235325881492 | bayes_pls_golite062009 |
| U1 snRNA binding | 0.290135317640781 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
|
Region A: Residues: [245-347] |
1 11 21 31 41 51
| | | | | |
1 IFVGGIGPDV RPKEFEEFFS QWGTIIDAQL MLDKDTGQSR GFGFVTYDSA DAVDRVCQNK 60
61 FIDFKDRKIE IKRAEPRHMQ QKSSNNGGNN GGNNMNRRGG NFG
|
| Detection Method: | |
| Confidence: | 13.0 |
| Match: | 1qm9A_ |
| Description: | Polypyrimidine tract-binding protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [348-429] |
1 11 21 31 41 51
| | | | | |
1 NQGDFNQMYQ NPMMGGYNPM MNPQAMTDYY QKMQEYYQQM QKQTGMDYTQ MYQQQMQQMA 60
61 MMMPGFAMPP NAMTLNQPQQ DS
|
| Detection Method: | |
| Confidence: | 13.0 |
| Match: | 1qm9A_ |
| Description: | Polypyrimidine tract-binding protein |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [430-534] |
1 11 21 31 41 51
| | | | | |
1 NATQGSPAPS DSDNNKSNDV QTIGNTSNTD SGSPPLNLPN GPKGPSQYND DHNSGYGYNR 60
61 DRGDRDRNDR DRDYNHRSGG NHRRNGRGGR GGYNRRNNGY HPYNR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
