YRC Public Data Repository - Protein Structure Prediction

Protein:	NRK1
Organism:	Saccharomyces cerevisiae
Length:	240 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRK1.

Description	E-value	Query Range	Subject Range
UKL5_ARATH - Uridine kinase-like protein 5 OS=Arabidopsis thaliana GN=UKL5 PE=2 SV=1	2.0E-43	[4..237]	[27..250]
NRK1_YEAST - Nicotinamide riboside kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRK1 PE=1 S... gi\|151944409 - gi\|151944409\|gb\|EDN62687.1\| nicotinamide riboside kinase [Saccharomyces cerevisiae YJM789] NRK1 - Nicotinamide riboside kinase, catalyzes the phosphorylation of nicotinamide riboside and nicotinic a... gi\|207341765 - gi\|207341765\|gb\|EDZ69731.1\| YNL129Wp-like protein [Saccharomyces cerevisiae AWRI1631]	6.0E-42	[1..240]	[1..240]
gi\|17936034, gi\|... - gi\|17936034\|ref\|NP_532824.1\| ABC transporter, nucleotide binding/ATPase protein [Agrobacterium tumef... gi\|25297123, gi\|... - pir\|\|H97617 ABC transporter, ATP-binding protein VCA0602 [imported] - Agrobacterium tumefaciens (str...	5.0E-41	[1..197]	[24..209]
gi\|25297153 - pir\|\|D95939 probable spermidineputrescine ABC transporter ATP-binding protein potA [imported] - Sino... gi\|15140665, gi\|... - gi\|16264528\|ref\|NP_437320.1\| putative spermidineputrescine ABC transporter ATP-binding protein [Sino...	4.0E-40	[2..208]	[28..224]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKKVILVA LSGCSSSGKT TIAKLTASLF TKATLIHEDD FYKHDNEVPV DAKYNIQNWD  60
   61 SPEALDFKLF GKELDVIKQT GKIATKLIHN NNVDDPFTKF HIDRQVWDEL KAKYDSINDD 120
  121 KYEVVIVDGF MIFNNTGISK KFDLKILVRA PYEVLKKRRA SRKGYQTLDS FWVDPPYYFD 180
  181 EFVYESYRAN HAQLFVNGDV EGLLDPRKSK NIKEFINDDD TPIAKPLSWV CQEILKLCKD 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.522879
Match:	1g291_
Description:	Maltose transport protein MalK, C-terminal domain; Maltose transport protein MalK, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.89648142312455	bayes_pls_golite062009
nucleic acid binding	1.08697924060619	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
DNA binding	0.702147676354075	bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism	0.351319981572451	bayes_pls_golite062009
transcription regulator activity	0.287777990975748	bayes_pls_golite062009
nucleobase, nucleoside, nucleotide kinase activity	0.12351419478929	bayes_pls_golite062009
helicase activity	0.0775311459068899	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: