| Protein: | IMP4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 290 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IMP4.
| Description | E-value | Query Range |
Subject Range |
|
|
7.0E-90 | [1..290] | [1..290] |
|
|
3.0E-82 | [1..290] | [1..288] |
|
|
2.0E-81 | [1..290] | [1..288] |
|
|
3.0E-81 | [1..290] | [1..283] |
|
|
7.0E-81 | [1..289] | [1..294] |
|
|
4.0E-80 | [1..290] | [1..287] |
|
|
2.0E-79 | [1..290] | [1..299] |
|
|
6.0E-77 | [1..290] | [1..292] |
|
|
7.0E-77 | [1..290] | [1..287] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MLRRQARERR EYLYRKAQEL QDSQLQQKRQ IIKQALAQGK PLPKELAEDE SLQKDFRYDQ 60
61 SLKESEEADD LQVDDEYAAT SGIMDPR
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [88-290] |
1 11 21 31 41 51
| | | | | |
1 IIVTTSRDPS TRLSQFAKEI KLLFPNAVRL NRGNYVMPNL VDACKKSGTT DLVVLHEHRG 60
61 VPTSLTISHF PHGPTAQFSL HNVVMRHDII NAGNQSEVNP HLIFDNFTTA LGKRVVCILK 120
121 HLFNAGPKKD SERVITFANR GDFISVRQHV YVRTREGVEI AEVGPRFEMR LFELRLGTLE 180
181 NKDADVEWQL RRFIRTANKK DYL
|
| Detection Method: | |
| Confidence: | 87.017729 |
| Match: | PF01945 |
| Description: | No description for PF01945 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| aminoacyl-tRNA ligase activity | 3.58650371779212 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 3.58624422951947 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 3.58624422951947 | bayes_pls_golite062009 |
| ligase activity | 2.71574082295198 | bayes_pls_golite062009 |
| proline-tRNA ligase activity | 2.35871952544841 | bayes_pls_golite062009 |
| binding | 1.73857064375258 | bayes_pls_golite062009 |
| catalytic activity | 0.902495165806215 | bayes_pls_golite062009 |
| protein binding | 0.358563180490135 | bayes_pls_golite062009 |
|
Region A: Residues: [177-290] |
1 11 21 31 41 51
| | | | | |
1 INAGNQSEVN PHLIFDNFTT ALGKRVVCIL KHLFNAGPKK DSERVITFAN RGDFISVRQH 60
61 VYVRTREGVE IAEVGPRFEM RLFELRLGTL ENKDADVEWQ LRRFIRTANK KDYL
|
| Detection Method: | |
| Confidence: | 1.84 |
| Match: | 1w94A |
| Description: | Crystal Structure of Mil (Mth680), an archaeal Imp4-like protein |
Matching Structure (courtesy of the PDB): |
|
