| Protein: | IMP4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 290 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IMP4.
| Description | E-value | Query Range |
Subject Range |
|
|
7.0E-90 | [1..290] | [1..290] |
|
|
3.0E-82 | [1..290] | [1..288] |
|
|
2.0E-81 | [1..290] | [1..288] |
|
|
3.0E-81 | [1..290] | [1..283] |
|
|
7.0E-81 | [1..289] | [1..294] |
|
|
4.0E-80 | [1..290] | [1..287] |
|
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2.0E-79 | [1..290] | [1..299] |
|
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6.0E-77 | [1..290] | [1..292] |
|
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7.0E-77 | [1..290] | [1..287] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MLRRQARERR EYLYRKAQEL QDSQLQQKRQ IIKQALAQGK PLPKELAEDE SLQKDFRYDQ 60
61 SLKESEEADD LQVDDEYAAT SGIMDPR
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.639 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.642 | a.2.7 | tRNA-binding arm |
| View | Download | 0.646 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.696 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.696 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.657 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.657 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.646 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.642 | a.2.7 | tRNA-binding arm |
| View | Download | 0.639 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.625 | a.2.7 | tRNA-binding arm |
| View | Download | 0.623 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.622 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.616 | a.26.1 | 4-helical cytokines |
| View | Download | 0.577 | a.30.1 | ROP protein |
| View | Download | 0.572 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.534 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.532 | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.531 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.522 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.515 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.515 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.515 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.493 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.491 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.482 | a.25.1 | Ferritin-like |
| View | Download | 0.474 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.466 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.465 | a.47.2 | t-snare proteins |
| View | Download | 0.456 | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.452 | a.2.7 | tRNA-binding arm |
| View | Download | 0.451 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.439 | a.63.1 | Apolipophorin-III |
| View | Download | 0.430 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.430 | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.419 | a.4.1 | Homeodomain-like |
| View | Download | 0.419 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.415 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.376 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.371 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.354 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.342 | a.7.7 | BAG domain |
| View | Download | 0.331 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.330 | a.7.1 | Spectrin repeat |
| View | Download | 0.330 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.313 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.313 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.312 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.311 | a.47.2 | t-snare proteins |
| View | Download | 0.309 | f.17.2 | Cytochrome c oxidase subunit II-like, transmembrane region |
| View | Download | 0.299 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.297 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.295 | a.7.1 | Spectrin repeat |
| View | Download | 0.294 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.293 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.290 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.287 | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.283 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.282 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.280 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.275 | a.47.2 | t-snare proteins |
| View | Download | 0.269 | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.269 | a.77.1 | DEATH domain |
| View | Download | 0.267 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.265 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.265 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.262 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.259 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.253 | a.74.1 | Cyclin-like |
| View | Download | 0.246 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.246 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.239 | a.74.1 | Cyclin-like |
| View | Download | 0.239 | a.7.1 | Spectrin repeat |
| View | Download | 0.238 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.238 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.234 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.234 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.227 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.223 | d.8.1 | Urease, gamma-subunit |
| View | Download | 0.221 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.220 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.218 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.216 | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.216 | a.7.7 | BAG domain |
| View | Download | 0.216 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.212 | a.130.1 | Chorismate mutase II |
| View | Download | 0.212 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.209 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.209 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.208 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.205 | a.118.1 | ARM repeat |
| View | Download | 0.204 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.201 | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.200 | a.2.7 | tRNA-binding arm |
|
Region A: Residues: [88-290] |
1 11 21 31 41 51
| | | | | |
1 IIVTTSRDPS TRLSQFAKEI KLLFPNAVRL NRGNYVMPNL VDACKKSGTT DLVVLHEHRG 60
61 VPTSLTISHF PHGPTAQFSL HNVVMRHDII NAGNQSEVNP HLIFDNFTTA LGKRVVCILK 120
121 HLFNAGPKKD SERVITFANR GDFISVRQHV YVRTREGVEI AEVGPRFEMR LFELRLGTLE 180
181 NKDADVEWQL RRFIRTANKK DYL
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| Detection Method: | |
| Confidence: | 87.017729 |
| Match: | PF01945 |
| Description: | No description for PF01945 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| aminoacyl-tRNA ligase activity | 3.58650371779212 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 3.58624422951947 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 3.58624422951947 | bayes_pls_golite062009 |
| ligase activity | 2.71574082295198 | bayes_pls_golite062009 |
| proline-tRNA ligase activity | 2.35871952544841 | bayes_pls_golite062009 |
| binding | 1.73857064375258 | bayes_pls_golite062009 |
| catalytic activity | 0.902495165806215 | bayes_pls_golite062009 |
| protein binding | 0.358563180490135 | bayes_pls_golite062009 |
|
Region A: Residues: [177-290] |
1 11 21 31 41 51
| | | | | |
1 INAGNQSEVN PHLIFDNFTT ALGKRVVCIL KHLFNAGPKK DSERVITFAN RGDFISVRQH 60
61 VYVRTREGVE IAEVGPRFEM RLFELRLGTL ENKDADVEWQ LRRFIRTANK KDYL
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| Detection Method: | |
| Confidence: | 1.84 |
| Match: | 1w94A |
| Description: | Crystal Structure of Mil (Mth680), an archaeal Imp4-like protein |
Matching Structure (courtesy of the PDB): |
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