Protein: | DSS1 |
Organism: | Saccharomyces cerevisiae |
Length: | 969 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DSS1.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..969] | [1..969] |
|
0.0 | [354..940] | [105..677] |
|
0.0 | [354..940] | [119..691] |
|
0.0 | [354..940] | [105..677] |
|
0.0 | [353..935] | [112..681] |
|
0.0 | [356..935] | [115..682] |
|
0.0 | [354..940] | [105..677] |
|
0.0 | [356..951] | [95..681] |
|
0.0 | [354..940] | [105..678] |
Region A: Residues: [1-434] |
1 11 21 31 41 51 | | | | | | 1 MVVRRKVHVL LIARSFHSYT PCFRVTTRGK RQRSKSKQQA KVELDHTREL DNDQATETVV 60 61 DRSVGPEKDI ESINKDFLQR TKGLEPDIEL KQLPQIKQEF NQRYKDRYVK PSEDWYVNSW 120 121 RSLTKPKIPL YKLINSDFQL ITKLKAPNPM EFQPVQLMES PLNVGDFVLL KMRPNELAMC 180 181 VSLPSSTMDP RYTFVTIDGT MCFATKNRVL LRIPHKLPAG IHSLIQPESH HKHLPIGTVK 240 241 NFSNQTNILP IVARQLITSR YPAQISKLAW KDLPITTKKL QLLHRSLQNY MGPWQIPFFT 300 301 LVGLVQKLDL NKALDDKNGI NYLTSLVNNY HTVNDIPINS PTFVSTYWAI MQQQESNLWG 360 361 EIHLNTALLS PISVTIIPLK SQHLYYAQVI EKLEANSYRE VNKFVKLVNE RKYRDISALY 420 421 PSVIQLLKDF AAGN |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [435-852] |
1 11 21 31 41 51 | | | | | | 1 FHNNGIIVAL ISKIFRKIER YKDCDITRDI CQDLINEITP NSIPNPLLLN MDLALPASSK 60 61 LVKWQQKLYD LTNIEELQWK KSGTDDDRYD FGDLRVFCID SETAHEIDDG VSVKNYGRDG 120 121 LYTLYIHIAD PTSMFPESTN VDIEGISTDI LNVALKRSFT TYLPDTVVPM LPQSICHLSD 180 181 LGKQGQRTKT ISFSVDVKIT SKCSGKSIEI MYDSFKIRKG IVSNFPKATY EDVDRILGTP 240 241 NSEASPVKKD LESLSMISKL LREQRIKNSN AVIFGEGFNK GLVMLNADSE GELTEVTFSD 300 301 QEETLSTILV SEMMILANTL TGRYFAENKI GGVFRCYKQL PLGEVAQQQY DSMITSTKKG 360 361 IFPKLKDIVK LSSLLNSSFY TGRPFRHEMI GAKQYLTVTS PLRRFPDLIN HLQIHRHL |
Detection Method: | |
Confidence: | 115.236572 |
Match: | PF00773 |
Description: | RNB-like protein |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [853-969] |
1 11 21 31 41 51 | | | | | | 1 QKKPLCFNQT QIDSLIWPIQ SRADILKRAS RNSSTYWTLN YLKKLTKLEP ERTFDVMVTS 60 61 VPQNGFTGCV FPDLSFARGT LKLHPSSMHY PMIGDIVKNC KISKIDCLEG MLELEKL |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.416 | d.153.1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) |
View | Download | 0.537 | a.118.8 | TPR-like |
View | Download | 0.411 | a.74.1 | Cyclin-like |
View | Download | 0.410 | c.97.1 | Cytidine deaminase-like |
View | Download | 0.464 | d.15.6 | Superantigen toxins, C-terminal domain |
View | Download | 0.405 | d.202.1 | Transcription factor NusA, N-terminal domain |
View | Download | 0.348 | d.169.1 | C-type lectin-like |
View | Download | 0.343 | d.102.1 | Regulatory factor Nef |
View | Download | 0.341 | a.74.1 | Cyclin-like |
View | Download | 0.313 | d.39.1 | Dynein light chain 8 (DLC8) |
View | Download | 0.311 | d.15.6 | Superantigen toxins, C-terminal domain |
View | Download | 0.301 | d.58.9 | RuBisCO, large subunit, small (N-terminal) domain |
View | Download | 0.299 | c.47.1 | Thioredoxin-like |
View | Download | 0.294 | a.60.9 | lambda integrase-like, N-terminal domain |
View | Download | 0.293 | a.24.17 | Group V grass pollen allergen |
View | Download | 0.287 | c.116.1 | alpha/beta knot |
View | Download | 0.283 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
View | Download | 0.282 | a.118.8 | TPR-like |
View | Download | 0.281 | d.53.1 | Ribosomal protein S3 C-terminal domain |
View | Download | 0.280 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
View | Download | 0.278 | b.1.1 | Immunoglobulin |
View | Download | 0.273 | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
View | Download | 0.272 | c.3.1 | FAD/NAD(P)-binding domain |
View | Download | 0.271 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
View | Download | 0.265 | d.52.4 | YhbC-like, N-terminal domain |
View | Download | 0.254 | d.153.1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) |
View | Download | 0.249 | a.71.2 | Helical domain of Sec23/24 |
View | Download | 0.232 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.229 | d.153.1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) |
View | Download | 0.216 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
View | Download | 0.209 | d.8.1 | Urease, gamma-subunit |
View | Download | 0.207 | a.62.1 | Hepatitis B viral capsid (hbcag) |
View | Download | 0.201 | a.4.5 | "Winged helix" DNA-binding domain |
Term | Confidence | Notes |
ribonuclease activity | 3.55580959453362 | bayes_pls_golite062009 |
nucleic acid binding | 2.8041095803798 | bayes_pls_golite062009 |
DNA binding | 2.12131488750007 | bayes_pls_golite062009 |
binding | 1.81248034004657 | bayes_pls_golite062009 |
exoribonuclease activity | 1.69948951519417 | bayes_pls_golite062009 |
exoribonuclease activity, producing 5'-phosphomonoesters | 1.66992550564008 | bayes_pls_golite062009 |
3'-5'-exoribonuclease activity | 1.15063310147711 | bayes_pls_golite062009 |
structure-specific DNA binding | 1.10289736160471 | bayes_pls_golite062009 |
single-stranded DNA binding | 0.96886436248958 | bayes_pls_golite062009 |
structural constituent of ribosome | 0.71554089842467 | bayes_pls_golite062009 |
structural molecule activity | 0.4798318776164 | bayes_pls_golite062009 |
transcription regulator activity | 0.398606646713208 | bayes_pls_golite062009 |
hydrolase activity | 0.357828165699872 | bayes_pls_golite062009 |
nuclease activity | 0.192509675054684 | bayes_pls_golite062009 |