| Protein: | VAC14 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 880 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAC14.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..880] | [1..880] |
|
|
0.0 | [1..799] | [1..740] |
|
|
0.0 | [1..797] | [9..665] |
|
|
0.0 | [393..801] | [1..503] |
|
|
0.0 | [144..800] | [25..666] |
|
|
0.0 | [1..449] | [8..406] |
|
Region A: Residues: [1-199] |
1 11 21 31 41 51
| | | | | |
1 MEKSIAKGLS DKLYEKRKAA ALELEKLVKQ CVLEGDYDRI DKIIDELCRD YAYALHQPMA 60
61 RNAGLMGLAA TAIALGINDV GRYLRNILPP VLACFGDQND QVRFYACESL YNIAKIAKGE 120
121 ILVYFNEIFD VLCKISADTE NSVRGAAELL DRLIKDIVAE RASNYISIVN NGSHGLLPAI 180
181 KTDPISGDVY QEEYEQDNQ
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.881 | 0.070 | vacuole inheritance | a.118.8 | TPR-like |
|
Region A: Residues: [200-653] |
1 11 21 31 41 51
| | | | | |
1 LAFSLPKFIP LLTERIYAIN PDTRVFLVDW LKVLLNTPGL ELISYLPSFL GGLFTFLGDS 60
61 HKDVRTVTHT LMDSLLHEVD RISKLQTEIK MKRLERLKML EDKYNNSSTP TKKADGALIA 120
121 EKKKTLMTAL GGLSKPLSME TDDTKLSNTN ETDDERHLTS QEQLLDSEAT SQEPLRDGEE 180
181 YIPGQDINLN FPEVITVLVN NLASSEAEIQ LIALHWIQVI LSISPNVFIP FLSKILSVLL 240
241 KLLSDSDPHI TEIAQLVNGQ LLSLCSSYVG KETDGKIAYG PIVNSLTLQF FDSRIDAKIA 300
301 CLDWLILIYH KAPNQILKHN DSMFLTLLKS LSNRDSVLIE KALSLLQSLC SDSNDNYLRQ 360
361 FLQDLLTLFK RDTKLVKTRA NFIMRQISSR LSPERVYKVI SSILDNYNDT TFVKMMIQIL 420
421 STNLITSPEM SSLRNKLRTC EDGMFFNSLF KSWC
|
| Detection Method: | |
| Confidence: | 11.67 |
| Match: | 1b89A |
| Description: | Clathrin heavy chain proximal leg segment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [654-880] |
1 11 21 31 41 51
| | | | | |
1 PNPVSVISLC FVAENYELAY TVLQTYANYE LKLNDLVQLD ILIQLFESPV FTRMRLQLLE 60
61 QQKHPFLHKC LFGILMIIPQ SKAFETLNRR LNSLNIWTSQ SYVMNNYIRQ RENSNFCDSN 120
121 SDISQRSVSQ SKLHFQELIN HFKAVSEEDE YSSDMIRLDH GANNKSLLLG SFLDGIDEDK 180
181 QEIVTPISPM NEAINEEMES PNDNSSVILK DSGSLPFNRN VSDKLKK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.53151481871847 | bayes_pls_golite062009 |
| nucleic acid binding | 1.70854853801477 | bayes_pls_golite062009 |
| protein binding | 1.61131270705552 | bayes_pls_golite062009 |
| transcription regulator activity | 1.1879835276438 | bayes_pls_golite062009 |
| DNA binding | 1.03880684185645 | bayes_pls_golite062009 |
| signal transducer activity | 0.862740830365635 | bayes_pls_golite062009 |
| molecular transducer activity | 0.862740830365635 | bayes_pls_golite062009 |
| structural molecule activity | 0.851103372489505 | bayes_pls_golite062009 |
| translation regulator activity | 0.642878560112121 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.620348955429476 | bayes_pls_golite062009 |
| transcription factor activity | 0.389120912139882 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.286790642914928 | bayes_pls_golite062009 |
|
Region A: Residues: [787-880] |
1 11 21 31 41 51
| | | | | |
1 HFQELINHFK AVSEEDEYSS DMIRLDHGAN NKSLLLGSFL DGIDEDKQEI VTPISPMNEA 60
61 INEEMESPND NSSVILKDSG SLPFNRNVSD KLKK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
