| Protein: | ARV1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 321 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARV1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..321] | [1..321] |
|
|
6.0E-63 | [1..262] | [1..206] |
|
|
5.0E-25 | [3..81] | [8..87] |
|
|
9.0E-22 | [3..68] | [34..100] |
|
|
2.0E-21 | [3..68] | [29..95] |
|
|
2.0E-20 | [28..117] | [103..178] |
|
|
1.0E-17 | [3..64] | [22..83] |
|
|
1.0E-17 | [2..63] | [8..68] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MICITCMRPV DSLYTVYSND HIQLTDCPYC QETVDKYVEI DNVLLFIDLL LLKAGAYRHL 60
61 VFNALELHLS KYPKRKALND CQCLRDYTQA LLFNVKNWFC KYDRLNRLWL LLLSFEIYLT 120
121 WVTEESKYIY YLNRN
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.700 | 0.831 | sterol metabolic process | a.26.1 | 4-helical cytokines |
| Term | Confidence | Notes |
| binding | 1.84624717401156 | bayes_pls_golite062009 |
| protein binding | 1.70162902007087 | bayes_pls_golite062009 |
| transporter activity | 1.30067041733468 | bayes_pls_golite062009 |
| receptor activity | 1.27081218639227 | bayes_pls_golite062009 |
| transcription regulator activity | 1.1514442454341 | bayes_pls_golite062009 |
| nucleic acid binding | 1.15037818154029 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.07971596062462 | bayes_pls_golite062009 |
| DNA binding | 1.07906220177233 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.809838091223165 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.555014154605011 | bayes_pls_golite062009 |
| transcription factor activity | 0.4825638884734 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.253562998805943 | bayes_pls_golite062009 |
| signal transducer activity | 0.212488443103452 | bayes_pls_golite062009 |
| molecular transducer activity | 0.212488443103452 | bayes_pls_golite062009 |
| catalytic activity | 0.133319360419662 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.0849070471490733 | bayes_pls_golite062009 |
|
Region A: Residues: [136-321] |
1 11 21 31 41 51
| | | | | |
1 NNDGKLIMLS KKLPESFKWD SAIMRNTITS KVFTWSPPIQ YLYFASYCIL DVSLFHTFTQ 60
61 YFILKKLHWK HYSVSSKDVI SYTILLSYGA KIFPILMLIW PYDTLISMSI IKWVANLYII 120
121 ESLKIVTNLS YWNIIKIFIS VSLLRYFMVK PILIVFVAKF NFSVIKNLIH QEFILLLQKS 180
181 GTYLLL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.552 | 0.839 | sterol metabolic process | a.26.1 | 4-helical cytokines |
|
Region A: Residues: [162-321] |
1 11 21 31 41 51
| | | | | |
1 TITSKVFTWS PPIQYLYFAS YCILDVSLFH TFTQYFILKK LHWKHYSVSS KDVISYTILL 60
61 SYGAKIFPIL MLIWPYDTLI SMSIIKWVAN LYIIESLKIV TNLSYWNIIK IFISVSLLRY 120
121 FMVKPILIVF VAKFNFSVIK NLIHQEFILL LQKSGTYLLL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
