| Protein: | UTP13 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 817 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UTP13.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [18..707] | [865..1491] |
|
|
0.0 | [16..761] | [1009..1678] |
|
Region A: Residues: [1-131] |
1 11 21 31 41 51
| | | | | |
1 MDLKTSYKGI SLNPIYAGSS AVATVSENGK ILATPVLDEI NIIDLTPGSR KILHKISNED 60
61 EQEITALKLT PDGQYLTYVS QAQLLKIFHL KTGKVVRSMK ISSPSYILDA DSTSTLLAVG 120
121 GTDGSIIVVD I
|
| Detection Method: |  |
| Confidence: | 3.75 |
| Match: | 1erjA |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| snoRNA binding | 6.03079504484743 | bayes_pls_golite062009 |
| 4.49063274868921 | bayes_pls_golite062009 | |
| myosin heavy chain kinase activity | 4.33124151198369 | bayes_pls_golite062009 |
| actin binding | 3.86142918698875 | bayes_pls_golite062009 |
| RNA binding | 3.77273677738815 | bayes_pls_golite062009 |
| myosin II binding | 3.56132510021228 | bayes_pls_golite062009 |
| GTPase activity | 3.23750443966606 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 3.1056443224755 | bayes_pls_golite062009 |
| tubulin binding | 2.76945430061825 | bayes_pls_golite062009 |
| microtubule binding | 2.72684103222924 | bayes_pls_golite062009 |
| dynein binding | 2.54821997913979 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| histone methyltransferase activity (H3-K4 specific) | 2.299832037975 | bayes_pls_golite062009 |
| protein binding | 2.26925404328312 | bayes_pls_golite062009 |
| G-protein-coupled receptor binding | 2.10926890165617 | bayes_pls_golite062009 |
| transcription regulator activity | 2.10348788067437 | bayes_pls_golite062009 |
| actin filament binding | 2.0735069176589 | bayes_pls_golite062009 |
| nucleic acid binding | 2.00420268007946 | bayes_pls_golite062009 |
| dynactin binding | 1.99805820148456 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 1.95039718468175 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.53722103498827 | bayes_pls_golite062009 |
| DNA binding | 1.53482914288832 | bayes_pls_golite062009 |
| structural molecule activity | 1.47097979074281 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| receptor activity | 1.12819778129653 | bayes_pls_golite062009 |
| mRNA binding | 1.05053985350578 | bayes_pls_golite062009 |
| microtubule plus-end binding | 1.01166033978052 | bayes_pls_golite062009 |
| myosin binding | 0.989691178611801 | bayes_pls_golite062009 |
| molecular transducer activity | 0.974380908248463 | bayes_pls_golite062009 |
| signal transducer activity | 0.974380908248463 | bayes_pls_golite062009 |
| protein transporter activity | 0.964340340346761 | bayes_pls_golite062009 |
| transcription factor activity | 0.897833210520351 | bayes_pls_golite062009 |
| kinase activity | 0.807669232329985 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.805273887494167 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.734793983890004 | bayes_pls_golite062009 |
| transcription activator activity | 0.724420384084538 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.634547834947756 | bayes_pls_golite062009 |
| transcription repressor activity | 0.624053529462119 | bayes_pls_golite062009 |
| protein kinase activity | 0.544118712921054 | bayes_pls_golite062009 |
| transcription factor binding | 0.469377587704245 | bayes_pls_golite062009 |
| dynein intermediate chain binding | 0.443846546939402 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.245000508226811 | bayes_pls_golite062009 |
| transferase activity | 0.217164597663731 | bayes_pls_golite062009 |
| ligase activity | 0.20682813699621 | bayes_pls_golite062009 |
| histone binding | 0.166694897714113 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.118975415284669 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.0803897416817422 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.0676565515282608 | bayes_pls_golite062009 |
| receptor binding | 0.0390635451962911 | bayes_pls_golite062009 |
| kinase binding | 0.0366162235750993 | bayes_pls_golite062009 |
| protein kinase binding | 0.00858004043229577 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
|
Region A: Residues: [132-178] |
1 11 21 31 41 51
| | | | | |
1 ENGYITHSFK GHGGTISSLK FYGQLNSKIW LLASGDTNGM VKVWDLV
|
| Detection Method: | |
| Confidence: | 5.420216 |
| Match: | PF00400 |
| Description: | WD domain, G-beta repeat |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [179-225] |
1 11 21 31 41 51
| | | | | |
1 KRKCLHTLQE HTSAVRGLDI IEVPDNDEPS LNLLSGGRDD IINLWDF
|
| Detection Method: | |
| Confidence: | 5.142668 |
| Match: | PF00400 |
| Description: | WD domain, G-beta repeat |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.611 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.591 | N/A | N/A | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.505 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.474 | N/A | N/A | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.442 | N/A | N/A | a.144.1 | PABC (PABP) domain |
|
Region A: Residues: [226-315] |
1 11 21 31 41 51
| | | | | |
1 NMKKKCKLLK TLPVNQQVES CGFLKDGDGK RIIYTAGGDA IFQLIDSESG SVLKRTNKPI 60
61 EELFIIGVLP ILSNSQMFLV LSDQTLQLIN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.381 | d.93.1 | SH2 domain |
| View | Download | 0.387 | a.77.1 | DEATH domain |
| View | Download | 0.470 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.408 | d.58.12 | eEF-1beta-like |
| View | Download | 0.371 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.365 | d.15.1 | Ubiquitin-like |
| View | Download | 0.351 | d.93.1 | SH2 domain |
| View | Download | 0.341 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.335 | a.22.1 | Histone-fold |
| View | Download | 0.313 | d.82.2 | Frataxin-like |
| View | Download | 0.303 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.302 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.302 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.297 | d.197.1 | Protein-L-isoaspartyl O-methyltransferase, C-terminal domain |
| View | Download | 0.290 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.279 | a.112.1 | Description not found. |
| View | Download | 0.278 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.275 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.269 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.269 | d.93.1 | SH2 domain |
| View | Download | 0.263 | d.146.1 | Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |
| View | Download | 0.248 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.224 | a.2.3 | Chaperone J-domain |
| View | Download | 0.222 | d.66.1 | Alpha-L RNA-binding motif |
| View | Download | 0.220 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.218 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.214 | d.95.2 | Homing endonucleases |
| View | Download | 0.213 | a.39.1 | EF-hand |
| View | Download | 0.200 | a.8.3 | Families 57/38 glycoside transferase middle domain |
|
Region A: Residues: [316-645] |
1 11 21 31 41 51
| | | | | |
1 VEEDLKNDED TIQVTSSIAG NHGIIADMRY VGPELNKLAL ATNSPSLRII PVPDLSGPEA 60
61 SLPLDVEIYE GHEDLLNSLD ATEDGLWIAT ASKDNTAIVW RYNENSCKFD IYAKYIGHSA 120
121 AVTAVGLPNI VSKGYPEFLL TASNDLTIKK WIIPKPTASM DVQIIKVSEY TRHAHEKDIN 180
181 ALSVSPNDSI FATASYDKTC KIWNLENGEL EATLANHKRG LWDVSFCQYD KLLATSSGDK 240
241 TVKIWSLDTF SVMKTLEGHT NAVQRCSFIN KQKQLISCGA DGLIKIWDCS SGECLKTLDG 300
301 HNNRLWALST MNDGDMIVSA DADGVFQFWK
|
| Detection Method: | |
| Confidence: | 179.758605 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [646-764] |
1 11 21 31 41 51
| | | | | |
1 DCTEQEIEEE QEKAKLQVEQ EQSLQNYMSK GDWTNAFLLA MTLDHPMRLF NVLKRALGES 60
61 RSRQDTEEGK IEVIFNEELD QAISILNDEQ LILLMKRCRD WNTNAKTHTI AQRTIRCIL
|
| Detection Method: | |
| Confidence: | 74.218487 |
| Match: | 1gxrA_ |
| Description: | Groucho/tle1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [765-817] |
1 11 21 31 41 51
| | | | | |
1 MHHNIAKLSE IPGMVKIVDA IIPYTQRHFT RVDNLVEQSY ILDYALVEMD KLF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.434 | a.4.1 | Homeodomain-like |
| View | Download | 0.611 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.442 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.591 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.474 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.434 | g.58.1 | Pheromone ER-23 |
| View | Download | 0.416 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.400 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.395 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.373 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.362 | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.354 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.354 | a.140.1 | LEM domain |
| View | Download | 0.343 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.329 | a.5.2 | UBA-like |
| View | Download | 0.297 | a.64.1 | Saposin |
| View | Download | 0.282 | a.4.1 | Homeodomain-like |
| View | Download | 0.274 | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.266 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.262 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.251 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.244 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.239 | a.32.1 | Transcription factor IIA (TFIIA), alpha-helical domain |
| View | Download | 0.217 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.214 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.213 | a.4.1 | Homeodomain-like |
| View | Download | 0.208 | d.59.1 | Ribosomal protein L30p/L7e |
