| Protein: | PEX13 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 386 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEX13.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-96 | [1..386] | [1..386] |
|
|
5.0E-75 | [1..385] | [1..349] |
|
|
3.0E-74 | [1..383] | [1..349] |
|
|
4.0E-74 | [1..383] | [1..349] |
|
|
2.0E-48 | [75..384] | [1..292] |
|
|
3.0E-45 | [123..372] | [49..288] |
|
|
7.0E-29 | [211..377] | [242..393] |
|
Region A: Residues: [1-109] |
1 11 21 31 41 51
| | | | | |
1 MSSTAVPRPK PWETSASLEE PQRNAQSLSA MMTSNQQDSR PTEESNNSNS ASESAPEVLP 60
61 RPAALNSSGT YGESNTIPGI YGNSNYGIPY DNNPYSMNSI YGNSIGRYG
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [110-198] |
1 11 21 31 41 51
| | | | | |
1 YGGSYYGNNY GSFYGGGYGA GAGYGMNNGS GLGESTKATF QLIESLIGAV TGFAQMLEST 60
61 YMATHNSFFT MISVAEQFGN LKEMLGSFF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.910 | 0.056 | peroxisomal membrane | a.7.8 | GAT domain |
|
Region A: Residues: [199-302] |
1 11 21 31 41 51
| | | | | |
1 GIFAIMKFLK KILYRATKGR LGIPPKNFAE SEGSKNKLIE DFQKFNDSGT INSNEKATRR 60
61 KISWKPLLFF LMAVFGFPYL LNKFITKLQT SGTIRASQGN GSEP
|
| Detection Method: | |
| Confidence: | 6.0 |
| Match: | 1bmbA_ |
| Description: | Growth factor receptor-bound protein 2 (GRB2) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.55003340159545 | bayes_pls_golite062009 |
| protein binding | 2.35325421236395 | bayes_pls_golite062009 |
| molecular adaptor activity | 0.68555837423221 | bayes_pls_golite062009 |
| signal transducer activity | 0.644330423191792 | bayes_pls_golite062009 |
| molecular transducer activity | 0.644330423191792 | bayes_pls_golite062009 |
| hydrolase activity | 0.31081944790532 | bayes_pls_golite062009 |
| protein binding, bridging | 0.230308623372106 | bayes_pls_golite062009 |
| receptor binding | 0.00920732436841987 | bayes_pls_golite062009 |
|
Region A: Residues: [303-386] |
1 11 21 31 41 51
| | | | | |
1 IDPSKLEFAR ALYDFVPENP EMEVALKKGD LMAILSKKDP LGRDSDWWKV RTKNGNIGYI 60
61 PYNYIEIIKR RKKIEHVDDE TRTH
|
| Detection Method: | |
| Confidence: | 63.39794 |
| Match: | 1aww__ |
| Description: | Bruton's tyrosine kinase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.49184519104882 | bayes_pls_golite062009 |
| protein binding | 2.29371158534719 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.67112127425228 | bayes_pls_golite062009 |
| transporter activity | 1.30447542854757 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.08558010881058 | bayes_pls_golite062009 |
| actin binding | 0.75525840382431 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.566172161499832 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.325817349097199 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.00508584255499911 | bayes_pls_golite062009 |
