| Protein: | TFA2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 328 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TFA2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..328] | [1..328] |
|
|
9.0E-92 | [62..325] | [15..281] |
|
|
5.0E-78 | [109..325] | [1..220] |
|
|
1.0E-76 | [47..324] | [7..288] |
|
|
2.0E-74 | [50..326] | [3..299] |
|
|
8.0E-66 | [47..325] | [7..285] |
|
|
2.0E-65 | [47..325] | [7..285] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MSKNRDPLLA NLNAFKSKVK SAPVIAPAKV GQKKTNDTVI TIDGNTRKRT ASERAQENTL 60
61 NSAKNPVLVD IKKEAGSNSS NAISLDDDDD DEDFGS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [97-187] |
1 11 21 31 41 51
| | | | | |
1 SPSKKVRPGS IAAAALQANQ TDISKSHDSS KLLWATEYIQ KKGKPVLVNE LLDYLSMKKD 60
61 DKVIELLKKL DRIEFDPKKG TFKYLSTYDV H
|
| Detection Method: | |
| Confidence: | 15.69897 |
| Match: | 1d8jA_ |
| Description: | The central core domain of TFIIE beta |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 5.67074370996647 | bayes_pls_golite062009 |
| transcription regulator activity | 5.55329976718261 | bayes_pls_golite062009 |
| DNA binding | 4.84466441605416 | bayes_pls_golite062009 |
| nucleic acid binding | 4.57954522145536 | bayes_pls_golite062009 |
| transcription factor activity | 4.12685284895733 | bayes_pls_golite062009 |
| binding | 4.05190810999633 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.60738445921725 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.3918869755162 | bayes_pls_golite062009 |
| transcription activator activity | 2.37668609508629 | bayes_pls_golite062009 |
| transcription repressor activity | 2.22485867684613 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 1.82365519759474 | bayes_pls_golite062009 |
| RNA polymerase activity | 1.82365519759474 | bayes_pls_golite062009 |
| protein binding | 0.961087148890615 | bayes_pls_golite062009 |
| transcription factor binding | 0.85714789329232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.66743181561551 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.237727660028553 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.157471576785569 | bayes_pls_golite062009 |
| hydrolase activity | 0.140191206949582 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.0360186926687502 | bayes_pls_golite062009 |
|
Region A: Residues: [188-328] |
1 11 21 31 41 51
| | | | | |
1 SPSELLKLLR SQVTFKGISC KDLKDGWPQC DETINQLEED SKILVLRTKK DKTPRYVWYN 60
61 SGGNLKCIDE EFVKMWENVQ LPQFAELPRK LQDLGLKPAS VDPATIKRQT KRVEVKKKRQ 120
121 RKGKITNTHM TGILKDYSHR V
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
