| Protein: | NMD5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1048 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NMD5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1048] | [1..1048] |
|
|
0.0 | [1..1046] | [1..997] |
|
|
0.0 | [1..1046] | [1..996] |
|
|
0.0 | [1..1046] | [1..996] |
|
|
0.0 | [1..1045] | [1..1012] |
|
|
0.0 | [6..1043] | [3..1012] |
|
Region A: Residues: [1-726] |
1 11 21 31 41 51
| | | | | |
1 MDITELLQCF ACTLDHNAAV RTNAETHLKN ASKVPGFLGA CLDIIAADEV PENIKLSASL 60
61 YFKNKITYGW SAGARQGSNE LLDSHVDPDE KPVVKDMLIK TMVSVSKTSP RCIRVLKSAL 120
121 TVIISEDYPS KKWGNLLPNS LELLANEDIT VTYVGLLCLA EIFRTYRWKN NDERQDLEEL 180
181 ILNYFPALLN YGANVLFQDG KYMNNEQIGE LVKLIIKIYK FVSYHDLPFT LQRSESFTPW 240
241 ACFFVSIIQQ PLPQEVLSIS DIEVRSKNPW VKCKKWALAN LYRLFQRYAS TSLTRKFQYD 300
301 EFKQMYCEEF LTQFLQVVFD QIEKWGTGQL WLSDECLYYI LNFVEQCVVQ KTTWKLVGPH 360
361 YNVILQHVIF PLLKPTAETL EAFDNDPQEY INRNMDFWDV GYSPDLAALA LLTTCVTKRG 420
421 KTTLQPTLEF MVSTLQSAVG DYNNIMLDNA LQIESCLRIF SSIIDRLITK DSPFASEMEK 480
481 FILTYVLPFF KSQYGFLQSR VCDICSKLGS MDFKDPVITS TIYEGVMNCL NNSSNSLPVE 540
541 LTAALALQTF ISDDQFNMKL SEHVVPTMQK LLSLSNDFES DVISGVMQDF VEQFAEQLQP 600
601 FGVELMNTLV QQFLKLAIDL HETSNLDPDS FTNVDSIPDE SDKQMAALGI LSTTISILLS 660
661 FENSPEILKN LEQSFYPAAE FILKNDIEDF YRECCEFVEN STFLLRDITP ISWKILELIG 720
721 ECNRKP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| protein transporter activity | 4.58709163830613 | bayes_pls_golite062009 |
| binding | 3.0667965351474 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 2.74547353635661 | bayes_pls_golite062009 |
| transporter activity | 2.48700774379895 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.26725422172281 | bayes_pls_golite062009 |
| nuclear export signal receptor activity | 2.13470398426489 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.97003189625955 | bayes_pls_golite062009 |
| nuclear localization sequence binding | 1.91487015967262 | bayes_pls_golite062009 |
| protein binding | 1.73688475473996 | bayes_pls_golite062009 |
| molecular transducer activity | 1.51103985174196 | bayes_pls_golite062009 |
| signal transducer activity | 1.51103985174196 | bayes_pls_golite062009 |
| actin binding | 1.4328432044371 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.28481004323799 | bayes_pls_golite062009 |
| RNA binding | 1.20550543134698 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 1.09652988954158 | bayes_pls_golite062009 |
| nucleic acid binding | 1.00841167631924 | bayes_pls_golite062009 |
| peptide binding | 0.61212282188613 | bayes_pls_golite062009 |
| signal sequence binding | 0.57106697498903 | bayes_pls_golite062009 |
| structural molecule activity | 0.449804281824548 | bayes_pls_golite062009 |
| transcription regulator activity | 0.385452858197632 | bayes_pls_golite062009 |
| mRNA binding | 0.37278269424461 | bayes_pls_golite062009 |
| DNA binding | 0.309260217284589 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.252495966234234 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.248585912061178 | bayes_pls_golite062009 |
| primary active transmembrane transporter activity | 0.226380819487924 | bayes_pls_golite062009 |
| P-P-bond-hydrolysis-driven transmembrane transporter activity | 0.217517113570989 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 0.178770060806735 | bayes_pls_golite062009 |
| ATPase activity, coupled to movement of substances | 0.175241020572885 | bayes_pls_golite062009 |
| ATPase activity, coupled to transmembrane movement of substances | 0.174922130116569 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.100181463251306 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.0635404099346928 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0548082069333885 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.052195223119721 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.0405268469927988 | bayes_pls_golite062009 |
|
Region A: Residues: [727-866] |
1 11 21 31 41 51
| | | | | |
1 DSMVSYYLSD FMLALNNILI YGRNELKKNE FYTKIIFEIY QKAVTAEDNS LDDLRVVFDL 60
61 SQELVLALDD SLPQQYRERL LADVVGSILT QKNELKTNVV FSVTAFNVVI SNMITEPLIT 120
121 LQYLKQQGCL EIFFQTWITD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [867-1048] |
1 11 21 31 41 51
| | | | | |
1 YIPNYKRCYD IKLSVLALLK IILKLESNDY SVLNLENLVP QLGSIVTQLA SRLPTALRQL 60
61 ANQRKEFSSS GFEEDTKWDE NFLDVGDDDE NDDEGDLTEK YLELIKNRAD SLDFVDGYDA 120
121 KETFDDLEED PLTGSILDTV DVYKVFKESI ANLQHVDSNR YQGILRHLTP ADQELFMGIM 180
181 NA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
