YRC Public Data Repository - Protein Structure Prediction

Protein:	RSM7
Organism:	Saccharomyces cerevisiae
Length:	247 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSM7.

Description	E-value	Query Range	Subject Range
gi\|207343787 - gi\|207343787\|gb\|EDZ71140.1\| YJR113Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151945179 - gi\|151945179\|gb\|EDN63430.1\| mitochondrial ribosomal small subunit component [Saccharomyces cerevisia... RSM7 - Mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S7 ribosomal protein RT07_YEAST - 37S ribosomal protein S7, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... gi\|190409587 - gi\|190409587\|gb\|EDV12852.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	2.0E-53	[1..247]	[1..247]
RS7_GEOSE - 30S ribosomal protein S7 OS=Geobacillus stearothermophilus GN=rpsG PE=1 SV=3	2.0E-52	[94..247]	[3..155]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-52	[94..247]	[3..155]
RS7_AGRFC - 30S ribosomal protein S7 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rpsG PE=3 SV=1 gi\|25294576, gi\|... - gi\|25294576\|pir\|\|AD2816 30S ribosomal protein S7 [imported] - Agrobacterium tumefaciens (strain C58,...	7.0E-51	[94..247]	[3..155]
RS7_BACSU - 30S ribosomal protein S7 OS=Bacillus subtilis GN=rpsG PE=1 SV=3 gi\|2632378, gi\|1... - gi\|2632378\|emb\|CAB11887.1\| ribosomal protein S7 (BS7) [Bacillus subtilis subsp. subtilis str. 168], ...	1.0E-50	[94..247]	[3..155]
RS7_RHILO - 30S ribosomal protein S7 OS=Rhizobium loti (strain MAFF303099) GN=rpsG PE=3 SV=1 RS7_RHILO - 30S ribosomal protein S7 OS=Rhizobium loti GN=rpsG PE=3 SV=1	1.0E-50	[94..247]	[3..155]
RS7_RHIME - 30S ribosomal protein S7 OS=Rhizobium meliloti (strain 1021) GN=rpsG PE=3 SV=1 RS7_RHIME - 30S ribosomal protein S7 OS=Rhizobium meliloti GN=rpsG PE=3 SV=1	2.0E-49	[94..247]	[3..155]
gi\|227899463, gi... - gi\|227899463\|ref\|ZP_04017268.1\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus TCH60]... gi\|228475276, gi... - gi\|228475276\|ref\|ZP_04060001.1\| ribosomal protein S7 [Staphylococcus hominis SK119], gi\|228270741\|gb... gi\|242241879, gi... - gi\|242241879\|ref\|ZP_04796324.1\| 30S ribosomal protein S7 [Staphylococcus epidermidis W23144], gi\|242... gi\|242372764, gi... - gi\|242372764\|ref\|ZP_04818338.1\| 30S ribosomal protein S7 [Staphylococcus epidermidis M23864:W1], gi\|... gi\|251806507, gi... - gi\|251809964\|ref\|ZP_04824437.1\| 30S ribosomal protein S7 [Staphylococcus epidermidis BCM-HMP0060], g... gi\|251802997, gi... - gi\|251813495\|ref\|ZP_04827968.1\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus TCH70]... RS7_STAA1 - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rpsG PE=3 SV=1 gi\|253315656 - gi\|253315656\|ref\|ZP_04838869.1\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus str. C... RS7_STAAE - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain Newman) GN=rpsG PE=3 SV=1 gi\|253725116, gi... - gi\|253731151\|ref\|ZP_04865316.1\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus USA300... gi\|253732554, gi... - gi\|253732554\|ref\|ZP_04866719.1\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus TCH130... gi\|255005340 - gi\|255005340\|ref\|ZP_05143941.2\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus Mu50-o... RS7_STAAN - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain N315) GN=rpsG PE=1 SV=1 RS7_STAAW - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain MW2) GN=rpsG PE=3 SV=1 RS7_STAEP - (P66618) 30S ribosomal protein S7 RS7_STAAM - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsG PE=3 SV=1 RS7_STAA9 - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain JH9) GN=rpsG PE=3 SV=1 RS7_STAA3 - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain USA300) GN=rpsG PE=3 SV=2 RS7_STAA2 - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain JH1) GN=rpsG PE=3 SV=1 gi\|269202169\|ref... - 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus ED98] RS7_STAHJ - 30S ribosomal protein S7 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsG PE=3 SV=1 RS7_STAA8 - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain NCTC 8325) GN=rpsG PE=3 SV=2 RS7_STAAT - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rpsG PE=3 SV=1 RS7_STAEQ - 30S ribosomal protein S7 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpsG PE=3 SV=1 gi\|25294568 - pir\|\|D89822 30S ribosomal protein S7 [imported] - Staphylococcus aureus (strain N315) RS7_STAAC - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain COL) GN=rpsG PE=3 SV=1 gi\|221141017 - gi\|221141017\|ref\|ZP_03565510.1\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus str. J... gi\|221139618 - gi\|221139618\|ref\|ZP_03564417.1\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus str. J... gi\|223042709, gi... - gi\|223042709\|ref\|ZP_03612757.1\| ribosomal protein S7 [Staphylococcus capitis SK14], gi\|222443563\|gb\|... RS7_STAAS - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain MSSA476) GN=rpsG PE=3 SV=1 RS7_STAES - 30S ribosomal protein S7 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpsG PE=3 SV=1 RS7_STAAR - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain MRSA252) GN=rpsG PE=3 SV=1 gi\|227246176, gi... - gi\|227557406\|ref\|ZP_03987453.1\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus MN8], ...	2.0E-49	[94..247]	[3..155]
RS7_BACHD - 30S ribosomal protein S7 OS=Bacillus halodurans GN=rpsG PE=3 SV=1 RS7_BACHD - 30S ribosomal protein S7 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9...	4.0E-49	[94..247]	[3..155]
RS7_CLOAB - 30S ribosomal protein S7 OS=Clostridium acetobutylicum GN=rpsG PE=3 SV=1 RS7_CLOAB - 30S ribosomal protein S7 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5...	1.0E-48	[94..247]	[3..155]

Back

Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHCARRYML VRPRLLWQSG TCVARFQSSV RTPASEPSAE KGVDEWLEAI NELREEFSAK  60
   61 EYLPETSLAP PGQSKVDLLQ GSQAGSKIK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [90-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTAEQLAQWE ALKSVPIPPR KNATLDHITN MIMRHGKKEK AQTILSRALY LVYCQTRQDP  60
   61 IQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	175.190949
Match:	1rss__
Description:	Ribosomal protein S7
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.1836043075256	bayes_pls_golite062009
structural molecule activity	9.60531852031349	bayes_pls_golite062009
RNA binding	2.69930050072854	bayes_pls_golite062009
nucleic acid binding	1.46100724116736	bayes_pls_golite062009
binding	1.32102784041703	bayes_pls_golite062009
protein binding	0.498656777425855	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [152-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALEKSLDELA PLMMTKTFNT GVAKASVIPV PLNKRQRNRI AWNWIVQSAN QRVSSDFAVR  60
   61 LGEELTAIAK GTSSAFEKRD QIHKTAIAHR AYIQLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	175.190949
Match:	1rss__
Description:	Ribosomal protein S7
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: