YRC Public Data Repository - Protein Structure Prediction

Protein:	RSM7
Organism:	Saccharomyces cerevisiae
Length:	247 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSM7.

Description	E-value	Query Range	Subject Range
gi\|207343787 - gi\|207343787\|gb\|EDZ71140.1\| YJR113Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151945179 - gi\|151945179\|gb\|EDN63430.1\| mitochondrial ribosomal small subunit component [Saccharomyces cerevisia... RSM7 - Mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S7 ribosomal protein RT07_YEAST - 37S ribosomal protein S7, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... gi\|190409587 - gi\|190409587\|gb\|EDV12852.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	2.0E-53	[1..247]	[1..247]
RS7_GEOSE - 30S ribosomal protein S7 OS=Geobacillus stearothermophilus GN=rpsG PE=1 SV=3	2.0E-52	[94..247]	[3..155]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-52	[94..247]	[3..155]
RS7_AGRFC - 30S ribosomal protein S7 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rpsG PE=3 SV=1 gi\|25294576, gi\|... - gi\|25294576\|pir\|\|AD2816 30S ribosomal protein S7 [imported] - Agrobacterium tumefaciens (strain C58,...	7.0E-51	[94..247]	[3..155]
RS7_BACSU - 30S ribosomal protein S7 OS=Bacillus subtilis GN=rpsG PE=1 SV=3 gi\|2632378, gi\|1... - gi\|2632378\|emb\|CAB11887.1\| ribosomal protein S7 (BS7) [Bacillus subtilis subsp. subtilis str. 168], ...	1.0E-50	[94..247]	[3..155]
RS7_RHILO - 30S ribosomal protein S7 OS=Rhizobium loti (strain MAFF303099) GN=rpsG PE=3 SV=1 RS7_RHILO - 30S ribosomal protein S7 OS=Rhizobium loti GN=rpsG PE=3 SV=1	1.0E-50	[94..247]	[3..155]
RS7_RHIME - 30S ribosomal protein S7 OS=Rhizobium meliloti (strain 1021) GN=rpsG PE=3 SV=1 RS7_RHIME - 30S ribosomal protein S7 OS=Rhizobium meliloti GN=rpsG PE=3 SV=1	2.0E-49	[94..247]	[3..155]
gi\|227899463, gi... - gi\|227899463\|ref\|ZP_04017268.1\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus TCH60]... gi\|228475276, gi... - gi\|228475276\|ref\|ZP_04060001.1\| ribosomal protein S7 [Staphylococcus hominis SK119], gi\|228270741\|gb... gi\|242241879, gi... - gi\|242241879\|ref\|ZP_04796324.1\| 30S ribosomal protein S7 [Staphylococcus epidermidis W23144], gi\|242... gi\|242372764, gi... - gi\|242372764\|ref\|ZP_04818338.1\| 30S ribosomal protein S7 [Staphylococcus epidermidis M23864:W1], gi\|... gi\|251806507, gi... - gi\|251809964\|ref\|ZP_04824437.1\| 30S ribosomal protein S7 [Staphylococcus epidermidis BCM-HMP0060], g... gi\|251802997, gi... - gi\|251813495\|ref\|ZP_04827968.1\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus TCH70]... RS7_STAA1 - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rpsG PE=3 SV=1 gi\|253315656 - gi\|253315656\|ref\|ZP_04838869.1\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus str. C... RS7_STAAE - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain Newman) GN=rpsG PE=3 SV=1 gi\|253725116, gi... - gi\|253731151\|ref\|ZP_04865316.1\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus USA300... gi\|253732554, gi... - gi\|253732554\|ref\|ZP_04866719.1\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus TCH130... gi\|255005340 - gi\|255005340\|ref\|ZP_05143941.2\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus Mu50-o... RS7_STAAN - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain N315) GN=rpsG PE=1 SV=1 RS7_STAAW - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain MW2) GN=rpsG PE=3 SV=1 RS7_STAEP - (P66618) 30S ribosomal protein S7 RS7_STAAM - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsG PE=3 SV=1 RS7_STAA9 - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain JH9) GN=rpsG PE=3 SV=1 RS7_STAA3 - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain USA300) GN=rpsG PE=3 SV=2 RS7_STAA2 - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain JH1) GN=rpsG PE=3 SV=1 gi\|269202169\|ref... - 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus ED98] RS7_STAHJ - 30S ribosomal protein S7 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsG PE=3 SV=1 RS7_STAA8 - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain NCTC 8325) GN=rpsG PE=3 SV=2 RS7_STAAT - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rpsG PE=3 SV=1 RS7_STAEQ - 30S ribosomal protein S7 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpsG PE=3 SV=1 gi\|25294568 - pir\|\|D89822 30S ribosomal protein S7 [imported] - Staphylococcus aureus (strain N315) RS7_STAAC - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain COL) GN=rpsG PE=3 SV=1 gi\|221141017 - gi\|221141017\|ref\|ZP_03565510.1\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus str. J... gi\|221139618 - gi\|221139618\|ref\|ZP_03564417.1\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus str. J... gi\|223042709, gi... - gi\|223042709\|ref\|ZP_03612757.1\| ribosomal protein S7 [Staphylococcus capitis SK14], gi\|222443563\|gb\|... RS7_STAAS - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain MSSA476) GN=rpsG PE=3 SV=1 RS7_STAES - 30S ribosomal protein S7 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpsG PE=3 SV=1 RS7_STAAR - 30S ribosomal protein S7 OS=Staphylococcus aureus (strain MRSA252) GN=rpsG PE=3 SV=1 gi\|227246176, gi... - gi\|227557406\|ref\|ZP_03987453.1\| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus MN8], ...	2.0E-49	[94..247]	[3..155]
RS7_BACHD - 30S ribosomal protein S7 OS=Bacillus halodurans GN=rpsG PE=3 SV=1 RS7_BACHD - 30S ribosomal protein S7 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9...	4.0E-49	[94..247]	[3..155]
RS7_CLOAB - 30S ribosomal protein S7 OS=Clostridium acetobutylicum GN=rpsG PE=3 SV=1 RS7_CLOAB - 30S ribosomal protein S7 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5...	1.0E-48	[94..247]	[3..155]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHCARRYML VRPRLLWQSG TCVARFQSSV RTPASEPSAE KGVDEWLEAI NELREEFSAK  60
   61 EYLPETSLAP PGQSKVDLLQ GSQAGSKIK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.390	a.16.1	S15/NS1 RNA-binding domain
View	Download	0.552	a.7.6	Ribosomal protein S20
View	Download	0.437	a.118.1	ARM repeat
View	Download	0.394	a.118.8	TPR-like
View	Download	0.437	a.118.1	ARM repeat
View	Download	0.394	a.118.8	TPR-like
View	Download	0.390	a.16.1	S15/NS1 RNA-binding domain
View	Download	0.552	a.60.6	DNA polymerase beta, N-terminal domain-like
View	Download	0.552	a.60.6	DNA polymerase beta, N-terminal domain-like
View	Download	0.552	a.7.6	Ribosomal protein S20
View	Download	0.386	a.24.17	Group V grass pollen allergen
View	Download	0.342	i.1.1	Ribosome and ribosomal fragments
View	Download	0.341	f.15.1	Small-conductance potassium channel
View	Download	0.339	a.4.1	Homeodomain-like
View	Download	0.332	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.318	a.46.1	Methionine synthase domain
View	Download	0.304	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.277	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.267	a.60.7	5' to 3' exonuclease, C-terminal subdomain
View	Download	0.266	a.126.1	Serum albumin-like
View	Download	0.265	a.7.3	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View	Download	0.263	a.77.1	DEATH domain
View	Download	0.258	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.237	a.47.2	t-snare proteins
View	Download	0.228	a.2.7	tRNA-binding arm
View	Download	0.222	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.219	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.216	d.129.4	Cell-division protein ZipA, C-terminal domain
View	Download	0.206	a.2.7	tRNA-binding arm
View	Download	0.204	a.77.1	DEATH domain
View	Download	0.202	a.46.2	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain

Predicted Domain #2

Region A:
Residues: [90-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTAEQLAQWE ALKSVPIPPR KNATLDHITN MIMRHGKKEK AQTILSRALY LVYCQTRQDP  60
   61 IQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	175.190949
Match:	1rss__
Description:	Ribosomal protein S7
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.1836043075256	bayes_pls_golite062009
structural molecule activity	9.60531852031349	bayes_pls_golite062009
RNA binding	2.69930050072854	bayes_pls_golite062009
nucleic acid binding	1.46100724116736	bayes_pls_golite062009
binding	1.32102784041703	bayes_pls_golite062009
protein binding	0.498656777425855	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [152-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALEKSLDELA PLMMTKTFNT GVAKASVIPV PLNKRQRNRI AWNWIVQSAN QRVSSDFAVR  60
   61 LGEELTAIAK GTSSAFEKRD QIHKTAIAHR AYIQLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	175.190949
Match:	1rss__
Description:	Ribosomal protein S7
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: