YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: EMC2
Organism: Saccharomyces cerevisiae
Length: 292 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EMC2.

Description E-value Query
Range		 Subject
Range
gi|46101125, gi|... - gi|71022837|ref|XP_761648.1| hypothetical protein UM05501.1 [Ustilago maydis 521], ref|XP_403116.1| ...
gi|14279385 - gi|14279385|gb|AAK58576.1|AF268097_1 TPR-containing protein Mql1 [Ustilago maydis]
 5.0E-42 [30..267] [197..423]
SPY_ARATH - Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis tha...
 7.0E-42 [10..279] [154..401]
SPY_HORVU - Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Hordeum vulgare...
gi|3617837 - gi|3617837|gb|AAC36055.1| gibberellin action negative regulator SPY [Hordeum vulgare]
 1.0E-40 [10..279] [145..392]
SPY_PETHY - Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida...
 2.0E-40 [10..279] [159..406]
gi|5052534 - gi|5052534|gb|AAD38597.1|AF145622_1 BcDNA.GH04245 [Drosophila melanogaster]
 3.0E-40 [15..292] [114..378]
gi|13775066 - gi|13775066|gb|AAK39123.1|AF363030_1 UDP-N-acetylglucosaminyltransferase [Mus musculus]
 5.0E-40 [15..284] [85..341]
CYC8_SCHPO - General transcriptional corepressor ssn6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=s...
ssn6 - transcriptional corepressor Ssn6
 6.0E-40 [29..267] [383..610]
OGT1_RAT - UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicu...
 7.0E-40 [15..284] [75..331]
OGT - O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylgluco...
gi|123993895, gi... - gi|224487755|dbj|BAH24112.1| O-linked N-acetylglucosamine (GlcNAc) transferase [synthetic construct]...
 8.0E-40 [15..284] [75..331]

Back

Predicted Domain #1
Region A:
Residues: [1-100] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKDLVREKL LTIMNTKAYT QFNPEQLLQL ENEMKIYMKS GDSALTEGNY FFLMEMLFYV  60
   61 LVYRNQDVDA QVVYNTLRDR LGENSYKMVI MKATLLQING

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.09691
Match: 1fchA_
Description: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.911909606569877 bayes_pls_golite062009
protein binding 0.420010637453541 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [101-177] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDKGAIEYLE NLLNDDLEYE TDFVTYVSIA KKLIAIKTTS KNLSQESVLK EVVALTDKFP  60
   61 LDAELWWYAS EIYFEMG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.09691
Match: 1fchA_
Description: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [178-292] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QFEKACYCLE QVLCITPFNY ACFGRLSETL YYEALRSKKQ TKTELLEKAL KNALRSVELS  60
   61 ELYLKGWALV NIISRELGRN KQNDLIKLSA SKLKEISAKS NNKDKITAEL ILNKI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.09691
Match: 1fchA_
Description: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle