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Protein Overview: ssn6

General Information:
Name(s) found: ssn6 / SPBC23E6.09 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • transcriptional corepressor Ssn6 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1102 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    protein complex [RCALink to PubMed article]
    Biological Process: negative regulation of transcription [ISSLink to PubMed article]
    positive regulation of transcription [ICLink to PubMed article]
    nucleosome positioning [ISSLink to PubMed article]
    chromatin silencing [ISSLink to PubMed article]
    Molecular Function: transcription coactivator activity [ISSLink to PubMed article]
    transcription corepressor activity [TASLink to PubMed article]
    general transcriptional repressor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQSQVATAS PSQNAQPNHG MGSKVLSSDP NASLPPQTAY YASPLHANSV SLPPSHLPRS  60
   61 TLHPLLSQQQ QPAQQSPSLG PAQQNIQQPP SVSIASQPHY AEAIVPIQQV LQPQQYRQLP 120
  121 PNMVAATNAP QQHPQLQRMM PILSSNQPIQ QLPLPNQASP YIPVPLQQQQ QSQPQQQPQQ 180
  181 QQHQQPQQPQ PPQQPLQQQQ QQRQLHSGIQ QPVSTIVSQN GTYYSIPAVN HPMAGQPIAI 240
  241 APVPAPNQAA LPPIPPQALP ANGTPNTLAS PVTLPAANSA VQNAQPVPMT SSPAMAVVPQ 300
  301 NKTAATSTLA AQQGANVLPP NAPESVRHLI SLNEETWIQI GRLAELFDDQ DKALSAYESA 360
  361 LRQNPYSIPA MLQIATILRN REQFPLAIEY YQTILDCDPK QGEIWSALGH CYLMQDDLSR 420
  421 AYSAYRQALY HLKDPKDPKL WYGIGILYDR YGSHEHAEEA FMQCLRMDPN FEKVNEIYFR 480
  481 LGIIYKQQHK FAQSLELFRH ILDNPPKPLT VLDIYFQIGH VYEQRKEYKL AKEAYERVLA 540
  541 ETPNHAKVLQ QLGWLCHQQS SSFTNQDLAI QYLTKSLEAD DTDAQSWYLI GRCYVAQQKY 600
  601 NKAYEAYQQA VYRDGRNPTF WCSIGVLYYQ INQYQDALDA YSRAIRLNPY ISEVWYDLGT 660
  661 LYESCHNQIS DALDAYQRAA ELDPTNPHIK ARLQLLRGPN NEQHKIVNAP PSNVPNVQTA 720
  721 KYINQPGVPY SNVPVAQLSG NWQPPHLPQA QLPSATGQSG VVQQPYQTQP SVTNNNVATQ 780
  781 PVIASTVPVQ TAAPSSQTAV PQTIHQSNAF TPRGKHASGS RNSISSTKSP QHKLSDQPRS 840
  841 RNNSISNVSH RERSNSVSSK SRETRTSASN ESDPKKSTQR DSSKKLENST VVSGSPSSSS 900
  901 KSDAAKSIKP QKPEPALKPV EGTADPKSTK RNHQETEKTA DTDVSSTEPV KRQKTADVND 960
  961 DVGEEEVKQS VSEQVDSAQL TSEPKSESLP KSPEEKSDDT SNDVTTENTN DINGDSNMDN1020
 1021 VATVDKSTDA VDTSTATVAA TTTTAEEELP QKESQERSSP SPENQDSTPL APKSVSPKQA1080
 1081 ARTLDIDENY DDDEGEKETV SV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..202] FFAS03 1.0 No description for 2j63A was found.
    2 View Details [203..297] PSI-BLAST 95.522879 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    3 View Details [298..700] PSI-BLAST 39.0 No description for 2gw1A was found.
    4 View Details [701..810] PSI-BLAST 10.39794 Protein farnesyltransferase alpha-subunit
    5 View Details [811..988] MSA 1.123991 View MSA. No confident structure predictions are available.
    6 View Details [989..1102] MSA 3.121991 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle