| Protein: | HCA4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 770 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HCA4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..770] | [1..770] |
|
|
0.0 | [5..768] | [3..732] |
|
|
0.0 | [3..743] | [33..818] |
|
|
0.0 | [1..768] | [10..737] |
|
|
0.0 | [3..734] | [37..717] |
|
|
0.0 | [21..452] | [152..579] |
|
|
0.0 | [6..438] | [88..504] |
|
Region A: Residues: [1-261] |
1 11 21 31 41 51
| | | | | |
1 MAKKNRLNTT QRKTLRQKED EYIENLKTKI DEYDPKITKA KFFKDLPISD PTLKGLRESS 60
61 FIKLTEIQAD SIPVSLQGHD VLAAAKTGSG KTLAFLVPVI EKLYREKWTE FDGLGALIIS 120
121 PTRELAMQIY EVLTKIGSHT SFSAGLVIGG KDVKFELERI SRINILIGTP GRILQHLDQA 180
181 VGLNTSNLQM LVLDEADRCL DMGFKKTLDA IVSTLSPSRQ TLLFSATQSQ SVADLARLSL 240
241 TDYKTVGTHD VMDGSVNKEA S
|
| Detection Method: |  |
| Confidence: | 581.9794 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [262-411] |
1 11 21 31 41 51
| | | | | |
1 TPETLQQFYI EVPLADKLDI LFSFIKSHLK CKMIVFLSSS KQVHFVYETF RKMQPGISLM 60
61 HLHGRQKQRA RTETLDKFNR AQQVCLFATD VVARGIDFPA VDWVVQVDCP EDVDTYIHRV 120
121 GRCARYGKKG KSLIMLTPQE QEAFLKRLNA
|
| Detection Method: | |
| Confidence: | 581.9794 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [412-529] |
1 11 21 31 41 51
| | | | | |
1 RKIEPGKLNI KQSKKKSIKP QLQSLLFKDP ELKYLGQKAF ISYVRSIYVQ KDKQVFKFDE 60
61 LPTEEFAYSL GLPGAPKIKM KGMKTIEQAK ERKNAPRQLA FLSKANEDGE VIEDKSKQ
|
| Detection Method: | |
| Confidence: | 8.09691 |
| Match: | 1d2mA_ |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [530-770] |
1 11 21 31 41 51
| | | | | |
1 PRTKYDKMFE RKNQTILSEH YLNITKAQAQ EDEDDDFISV KRKDHEINEA ELPALTLPTS 60
61 RRAQKKALSK KASLASKGNA SKLIFDDEGE AHPVYELEDE EEFHKRGDAE VQKTEFLTKE 120
121 SAVMADIDNI DKQVAKEKKQ EKKRKRLEAM RREMEAAMEE EISGDEEEGK TVAYLGTGNL 180
181 SDDMSDGDMP DSEGHLKKKA RTVDYSHGHN PSNSVDDDII EVEEPQTLED LESLTAKLIQ 240
241 G
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
