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View Structure Prediction Details

Protein: HCA4
Organism: Saccharomyces cerevisiae
Length: 770 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HCA4.

Description E-value Query
Range
Subject
Range
gi|1619952 - gi|1619952|gb|AAB17005.1| putative RNA helicase [Saccharomyces cerevisiae]
0.0 [1..770] [1..770]
SPAC1093.05 - ATP-dependent RNA helicase Hca4
DBP4_SCHPO - ATP-dependent RNA helicase dbp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dbp4 PE=1 ...
0.0 [5..768] [3..732]
DDX10 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
0.0 [3..743] [33..818]
RH32_ARATH - DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana GN=RH32 PE=2 SV=1
0.0 [1..768] [10..737]
CE25231 - status:Confirmed UniProt:Q9N478 protein_id:AAF60456.1
0.0 [3..734] [37..717]
gi|10039327 - gi|10039327|dbj|BAB13306.1| PL10-related protein CnPL10 [Hydra magnipapillata]
0.0 [21..452] [152..579]
gi|5270 - gi|5270|emb|CAA36873.1| p68 protein [Schizosaccharomyces pombe]
0.0 [6..438] [88..504]

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Predicted Domain #1
Region A:
Residues: [1-261]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKNRLNTT QRKTLRQKED EYIENLKTKI DEYDPKITKA KFFKDLPISD PTLKGLRESS  60
   61 FIKLTEIQAD SIPVSLQGHD VLAAAKTGSG KTLAFLVPVI EKLYREKWTE FDGLGALIIS 120
  121 PTRELAMQIY EVLTKIGSHT SFSAGLVIGG KDVKFELERI SRINILIGTP GRILQHLDQA 180
  181 VGLNTSNLQM LVLDEADRCL DMGFKKTLDA IVSTLSPSRQ TLLFSATQSQ SVADLARLSL 240
  241 TDYKTVGTHD VMDGSVNKEA S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 581.9794
Match: 1hv8A_
Description: Putative DEAD box RNA helicase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [262-411]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPETLQQFYI EVPLADKLDI LFSFIKSHLK CKMIVFLSSS KQVHFVYETF RKMQPGISLM  60
   61 HLHGRQKQRA RTETLDKFNR AQQVCLFATD VVARGIDFPA VDWVVQVDCP EDVDTYIHRV 120
  121 GRCARYGKKG KSLIMLTPQE QEAFLKRLNA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 581.9794
Match: 1hv8A_
Description: Putative DEAD box RNA helicase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [412-529]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKIEPGKLNI KQSKKKSIKP QLQSLLFKDP ELKYLGQKAF ISYVRSIYVQ KDKQVFKFDE  60
   61 LPTEEFAYSL GLPGAPKIKM KGMKTIEQAK ERKNAPRQLA FLSKANEDGE VIEDKSKQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.09691
Match: 1d2mA_
Description: Nucleotide excision repair enzyme UvrB
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [530-770]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRTKYDKMFE RKNQTILSEH YLNITKAQAQ EDEDDDFISV KRKDHEINEA ELPALTLPTS  60
   61 RRAQKKALSK KASLASKGNA SKLIFDDEGE AHPVYELEDE EEFHKRGDAE VQKTEFLTKE 120
  121 SAVMADIDNI DKQVAKEKKQ EKKRKRLEAM RREMEAAMEE EISGDEEEGK TVAYLGTGNL 180
  181 SDDMSDGDMP DSEGHLKKKA RTVDYSHGHN PSNSVDDDII EVEEPQTLED LESLTAKLIQ 240
  241 G

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle