YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: AIR1
Organism: Saccharomyces cerevisiae
Length: 360 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AIR1.

Description E-value Query
Range
Subject
Range
AIR1 - Zinc knuckle protein, involved in nuclear RNA processing and degradation as a component of the TRAMP...
AIR1_YEAST - Protein AIR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIR1 PE=1 SV=1
gi|151943084 - gi|151943084|gb|EDN61419.1| arginine methyltransferase-interacting ring finger protein [Saccharomyce...
0.0 [1..360] [1..360]
gi|5305478 - gi|5305478|gb|AAD41666.1|AF075702_1 gag protein [Human immunodeficiency virus type 1]
1.0E-97 [20..238] [303..496]

Back

Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLLSEVES IDTLPYVKDT TPTGSDSSSF NKLLAPSIED VDANPEELRT LRGQGRYFGI  60
   61 TDYDSNGAIM EAEPKCNNCS QRGHLKRNCP HVICTYCGF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.522879
Match: 1baj__
Description: HIV capsid protein, dimerisation domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 3.04588712677166 bayes_pls_golite062009
DNA binding 2.53317408686316 bayes_pls_golite062009
nucleic acid binding 2.33828046499668 bayes_pls_golite062009
binding 2.07015157850093 bayes_pls_golite062009
transcription factor activity 2.0090791129794 bayes_pls_golite062009
transcription activator activity 0.68790059848359 bayes_pls_golite062009
protein binding 0.679430693038119 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [100-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDHYSQHCP KAIICTNCNA NGHYKSQCPH KWKKVFCTLC NSKRHSRERC PSIWRSYLLK  60
   61 TKDANQGDF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.69897
Match: 1aaf__
Description: HIV nucleocapsid
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [169-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFQTVFCYNC GNAGHFGDDC AERRSSRVPN TDGSAFCGDN LATKFKQHYF NQLKDYKREA  60
   61 SQRQH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [234-360]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDNEHEFNLL DYEYNDDAYD LPGSRTYRDK MKWKGKVQST RNKNSSNNRY ESSNNRKKKS  60
   61 PFSAQNYKVT KNKRVQTHPL DFPRSSQNNR TNDYSSQFSY NRDDFPKGPK NKRGRSSSNK 120
  121 SQRNGRY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle