| Protein: | AIR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 360 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AIR1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..360] | [1..360] |
|
|
1.0E-97 | [20..238] | [303..496] |
|
Region A: Residues: [1-99] |
1 11 21 31 41 51
| | | | | |
1 MSTLLSEVES IDTLPYVKDT TPTGSDSSSF NKLLAPSIED VDANPEELRT LRGQGRYFGI 60
61 TDYDSNGAIM EAEPKCNNCS QRGHLKRNCP HVICTYCGF
|
| Detection Method: |  |
| Confidence: | 35.522879 |
| Match: | 1baj__ |
| Description: | HIV capsid protein, dimerisation domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.04588712677166 | bayes_pls_golite062009 |
| DNA binding | 2.53317408686316 | bayes_pls_golite062009 |
| nucleic acid binding | 2.33828046499668 | bayes_pls_golite062009 |
| binding | 2.07015157850093 | bayes_pls_golite062009 |
| transcription factor activity | 2.0090791129794 | bayes_pls_golite062009 |
| transcription activator activity | 0.68790059848359 | bayes_pls_golite062009 |
| protein binding | 0.679430693038119 | bayes_pls_golite062009 |
|
Region A: Residues: [100-168] |
1 11 21 31 41 51
| | | | | |
1 MDDHYSQHCP KAIICTNCNA NGHYKSQCPH KWKKVFCTLC NSKRHSRERC PSIWRSYLLK 60
61 TKDANQGDF
|
| Detection Method: | |
| Confidence: | 24.69897 |
| Match: | 1aaf__ |
| Description: | HIV nucleocapsid |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [169-233] |
1 11 21 31 41 51
| | | | | |
1 DFQTVFCYNC GNAGHFGDDC AERRSSRVPN TDGSAFCGDN LATKFKQHYF NQLKDYKREA 60
61 SQRQH
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.336 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.336 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.307 | a.2.7 | tRNA-binding arm |
| View | Download | 0.307 | a.2.7 | tRNA-binding arm |
| View | Download | 0.265 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.265 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.289 | d.9.2 | Description not found. |
| View | Download | 0.289 | d.9.2 | Description not found. |
| View | Download | 0.282 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.282 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.249 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.246 | d.120.1 | Cytochrome b5 |
| View | Download | 0.238 | c.47.1 | Thioredoxin-like |
| View | Download | 0.235 | a.4.1 | Homeodomain-like |
| View | Download | 0.231 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.205 | a.60.11 | Hypothetical protein YjbJ |
|
Region A: Residues: [234-360] |
1 11 21 31 41 51
| | | | | |
1 FDNEHEFNLL DYEYNDDAYD LPGSRTYRDK MKWKGKVQST RNKNSSNNRY ESSNNRKKKS 60
61 PFSAQNYKVT KNKRVQTHPL DFPRSSQNNR TNDYSSQFSY NRDDFPKGPK NKRGRSSSNK 120
121 SQRNGRY
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
