| Protein: | UTP9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 575 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UTP9.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..575] | [1..575] |
|
Region A: Residues: [1-369] |
1 11 21 31 41 51
| | | | | |
1 MGSSLDLVAS FSHDSTRFAF QASVAQKNNV DIYPLNETKD YVVNSSLVSH IDYETNDMKV 60
61 SDVIFFGWCS DLIDTQSSNI KRKLDEDEGT GESSEQRCEN FFVNGFPDGR IVVYSSNGKD 120
121 IVNIIKNKKE ILGADTDESD IWILDSDKVV KKLQYNNSKP LKTFTLVDGK DDEIVHFQIL 180
181 HQNGTLLVCI ITKQMVYIVD PSKRRPSTKY SFEISDAVAC EFSSDGKYLL IANNEELIAY 240
241 DLKEDSKLIQ SWPVQVKTLK TLDDLIMALT TDGKINNYKI GEADKVCSIV VNEDLEIIDF 300
301 TPINSKQQVL ISWLNVNEPN FESISLKEIE TQGYITINKN EKNNADEADQ KKLEEKEEEA 360
361 QPEVQHEKK
|
| Detection Method: |  |
| Confidence: | 1.54 |
| Match: | 1tbgA |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 3.17730118508639 | bayes_pls_golite062009 | |
| snoRNA binding | 3.12844073350845 | bayes_pls_golite062009 |
| RNA binding | 2.97000647761702 | bayes_pls_golite062009 |
| binding | 2.38386546684697 | bayes_pls_golite062009 |
| transcription regulator activity | 2.36560618519891 | bayes_pls_golite062009 |
| nucleic acid binding | 2.30172153305516 | bayes_pls_golite062009 |
| protein binding | 2.19549049361621 | bayes_pls_golite062009 |
| DNA binding | 1.74970945772818 | bayes_pls_golite062009 |
| structural molecule activity | 1.32884088690898 | bayes_pls_golite062009 |
| transcription activator activity | 1.24665557926829 | bayes_pls_golite062009 |
| transcription factor activity | 1.10790917305704 | bayes_pls_golite062009 |
| transcription repressor activity | 0.561205988591905 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.435475723571992 | bayes_pls_golite062009 |
| transcription factor binding | 0.421428497325728 | bayes_pls_golite062009 |
| ligase activity | 0.279385134085056 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.203779337313278 | bayes_pls_golite062009 |
| mRNA binding | 0.0554986997005726 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.00328955300255629 | bayes_pls_golite062009 |
|
Region A: Residues: [370-443] |
1 11 21 31 41 51
| | | | | |
1 ETETKINKKV SKSDQVEIAN ILSSHLEANS TEILDDLMSG SWTEPEIKKF ILTKINTVDH 60
61 LSKIFLTISK SITQ
|
| Detection Method: | |
| Confidence: | 1.64 |
| Match: | 1erjC |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [444-575] |
1 11 21 31 41 51
| | | | | |
1 NPWNEENLLP LWLKWLLTLK SGELNSIKDK HTKKNCKHLK SALRSSEEIL PVLLGIQGRL 60
61 EMLRRQAKLR EDLAQLSMQE GEDDEIEVIE HSNVISNPLQ DQASPVEKLE PDSIVYANGE 120
121 SDEFVDASEY KD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
