YRC Public Data Repository - Protein Structure Prediction

Protein:	WSS1
Organism:	Saccharomyces cerevisiae
Length:	269 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WSS1.

Description	E-value	Query Range	Subject Range
WSS1_YEAST - DNA-dependent metalloprotease WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WSS1 ... WSS1 - Sumoylated protein of unknown function, identified based on genetic interactions with SMT3; UV-sensi...	0.0	[1..269]	[1..269]
gi\|14719278 - gi\|14719278\|gb\|AAK73103.1\|AF391808_1 hypothetical protein 4 [Zea mays]	4.0E-77	[28..252]	[8..220]
gi\|8778309 - gi\|8778309\|gb\|AAF79318.1\|AC002304_11 F14J16.17 [Arabidopsis thaliana]	2.0E-74	[28..245]	[65..274]
gi\|9957265 - gi\|9957265\|gb\|AAG09296.1\|AF177768_2 ORF556 [Trypanosoma brucei]	9.0E-49	[25..192]	[13..189]
YQ77_SCHPO - Ubiquitin and WLM domain-containing metalloprotease SPCC1442.07c OS=Schizosaccharomyces pombe (strai... SPCC1442.07c - ubiquitin /metalloprotease fusion protein	2.0E-43	[6..152]	[82..239]
gi\|32413176, gi\|... - gi\|32413176\|ref\|XP_327068.1\| hypothetical protein [Neurospora crassa], gi\|28925309\|gb\|EAA34387.1\| hy... gi\|85110770 - gi\|85110770\|ref\|XP_963623.1\| hypothetical protein NCU06782 [Neurospora crassa OR74A]	6.0E-40	[30..220]	[184..386]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTEGIKSPS AKYHDMAGSQ RIPHKNPHIQ KVAVLQSKPN KEDALNLIKE IAHKVSYLMK  60
   61 ENHFKVTNLV EFYPRDQRLL GMNVNHGSKI MLRLRCSTDE FQFLPMECIM GTMLHELTHN 120
  121 LFGPHDKKFY NKLDELIGRQ WVIEQRGLYD TFLGNGQRLG GRANLRSNRY PMTGISTNTG 180
  181 IVRKRG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [187-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGVKLGSLHP EGISSIDRGN SPRELAAFAA ERRYRDDRWC GETKNNKDQI ISDNISSSLE  60
   61 VVILDDDDEV LPGDTLIEVI DLT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits