Protein: | ARN1 |
Organism: | Saccharomyces cerevisiae |
Length: | 627 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARN1.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..627] | [1..627] |
|
2.0E-87 | [59..608] | [16..539] |
|
5.0E-84 | [1..591] | [1..569] |
|
1.0E-80 | [30..597] | [1..564] |
|
2.0E-80 | [7..591] | [34..591] |
|
2.0E-80 | [47..591] | [10..533] |
|
3.0E-80 | [1..599] | [66..636] |
|
5.0E-80 | [1..601] | [26..609] |
|
4.0E-79 | [71..586] | [9..501] |
Region A: Residues: [1-69] |
1 11 21 31 41 51 | | | | | | 1 MESVHSRDPV KEEKKHVFMG MEHELNPETH NDSNSDSYGL PQLSEKYNAL RQNRSLIIQQ 60 61 TEIIGSAYN |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.634 | a.64.1 | Saposin |
View | Download | 0.216 | c.98.1 | MurE/MurF N-terminal domain |
Term | Confidence | Notes |
substrate-specific transmembrane transporter activity | 5.46247398538901 | bayes_pls_golite062009 |
ion transmembrane transporter activity | 4.58978526526921 | bayes_pls_golite062009 |
cation transmembrane transporter activity | 4.31967711223954 | bayes_pls_golite062009 |
transporter activity | 4.09176719149278 | bayes_pls_golite062009 |
substrate-specific transporter activity | 3.59744164024479 | bayes_pls_golite062009 |
transmembrane transporter activity | 3.5865018981083 | bayes_pls_golite062009 |
active transmembrane transporter activity | 1.59419818573076 | bayes_pls_golite062009 |
binding | 1.26757615356623 | bayes_pls_golite062009 |
anion transmembrane transporter activity | 1.24023641504332 | bayes_pls_golite062009 |
secondary active transmembrane transporter activity | 1.22264637452409 | bayes_pls_golite062009 |
polyol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
alcohol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
glycerol transmembrane transporter activity | 0.812001619402678 | bayes_pls_golite062009 |
solute:cation symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
cation:sugar symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
sugar:hydrogen symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
Region A: Residues: [70-260] |
1 11 21 31 41 51 | | | | | | 1 KWYLQAILLL SAFICGYGYG LDGNIRYIYT GYATSSYSEH SLLSTINVIN AVVSAASQII 60 61 YARLSDVFGR LYLFISAVIL YVVGTIIQSQ AYDVQRYAAG AIFYNAGYVG VILILLIILS 120 121 DFSSLKWRLL YQFVPTWPFI INTWIAGNIT SRANPVVNWS WDVGMWAFIF PLSCVPIVLC 180 181 MLHMQWRARK T |
Detection Method: | |
Confidence: | 9.154902 |
Match: | 1lviA_ |
Description: | No description for 1lviA_ was found. |
Region A: Residues: [261-320] |
1 11 21 31 41 51 | | | | | | 1 PEWHALKGQK SYYQEHGFIK ILKQLFWMLD VVGVLLMGCS LGCILVPLTL AGGVKTTWND 60 61 |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.511 | a.4.1 | Homeodomain-like |
View | Download | 0.491 | a.35.1 | lambda repressor-like DNA-binding domains |
View | Download | 0.370 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
View | Download | 0.415 | a.144.1 | PABC (PABP) domain |
View | Download | 0.400 | a.144.2 | Ribosomal protein L20 |
View | Download | 0.364 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
View | Download | 0.360 | a.4.1 | Homeodomain-like |
View | Download | 0.336 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
View | Download | 0.329 | a.4.1 | Homeodomain-like |
View | Download | 0.272 | d.88.1 | SRF-like |
View | Download | 0.271 | a.50.1 | Anaphylotoxins (complement system) |
View | Download | 0.270 | a.56.1 | CO dehydrogenase ISP C-domain like |
View | Download | 0.268 | a.4.1 | Homeodomain-like |
View | Download | 0.258 | a.4.1 | Homeodomain-like |
View | Download | 0.240 | d.100.1 | L9 N-domain-like |
View | Download | 0.229 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
View | Download | 0.219 | a.4.10 | N-terminal Zn binding domain of HIV integrase |
View | Download | 0.206 | c.47.1 | Thioredoxin-like |
View | Download | 0.204 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
View | Download | 0.200 | a.139.1 | Type I dockerin domain |
Region A: Residues: [321-544] |
1 11 21 31 41 51 | | | | | | 1 SRLIGPFVLG FVLIPILWIW EYRFARDPIL PYRLVKDRAV WSSMGISFLI DFIYYMAADY 60 61 LYTVMIVAVN ESVKSATRIA TLSSFVSTVA SPFFALLVTR CTRLKPFIMF GCALWMVAMG 120 121 LLYHFRGGSQ SHSGIIGALC VWGVGTTLFT YPVTVSVQSA VSHENMATVT ALNYTLYRIG 180 181 SAVGSAVSGA IWTQTLYKQI LKRMGDVALA TTAYESPYTF IETY |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [545-627] |
1 11 21 31 41 51 | | | | | | 1 TWGTPQRNAL MNAYKYVQRL ETIVALVFCV PLIAFSLCLR DPKLTDTVAV EYIEDGEYVD 60 61 TKDNDPILDW FEKLPSKFTF KRE |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.616 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.675 | a.4.1 | Homeodomain-like |
View | Download | 0.507 | a.35.1 | lambda repressor-like DNA-binding domains |
View | Download | 0.521 | a.74.1 | Cyclin-like |
View | Download | 0.580 | c.55.4 | Translational machinery components |
View | Download | 0.495 | a.56.1 | CO dehydrogenase ISP C-domain like |
View | Download | 0.484 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.454 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
View | Download | 0.440 | a.77.1 | DEATH domain |
View | Download | 0.423 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
View | Download | 0.412 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
View | Download | 0.409 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
View | Download | 0.359 | c.78.2 | Aspartate/glutamate racemase |
View | Download | 0.358 | a.74.1 | Cyclin-like |
View | Download | 0.350 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
View | Download | 0.334 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
View | Download | 0.322 | a.126.1 | Serum albumin-like |
View | Download | 0.307 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
View | Download | 0.299 | a.56.1 | CO dehydrogenase ISP C-domain like |
View | Download | 0.298 | a.64.2 | Bacteriocin AS-48 |
View | Download | 0.296 | a.118.1 | ARM repeat |
View | Download | 0.287 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
View | Download | 0.275 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
View | Download | 0.274 | a.24.17 | Group V grass pollen allergen |
View | Download | 0.273 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
View | Download | 0.272 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
View | Download | 0.261 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
View | Download | 0.255 | a.11.1 | Acyl-CoA binding protein |
View | Download | 0.253 | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
View | Download | 0.250 | a.65.1 | Annexin |
View | Download | 0.248 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
View | Download | 0.247 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
View | Download | 0.245 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.244 | a.60.13 | Putative methyltransferase TM0872, insert domain |
View | Download | 0.241 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
View | Download | 0.239 | a.35.1 | lambda repressor-like DNA-binding domains |
View | Download | 0.237 | a.60.2 | RuvA domain 2-like |
View | Download | 0.234 | d.39.1 | Dynein light chain 8 (DLC8) |
View | Download | 0.228 | a.71.2 | Helical domain of Sec23/24 |
View | Download | 0.224 | d.17.4 | NTF2-like |
View | Download | 0.224 | a.60.9 | lambda integrase-like, N-terminal domain |
View | Download | 0.217 | d.8.1 | Urease, gamma-subunit |
View | Download | 0.216 | a.60.2 | RuvA domain 2-like |
View | Download | 0.215 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
View | Download | 0.212 | a.71.2 | Helical domain of Sec23/24 |
View | Download | 0.208 | a.17.1 | p8-MTCP1 |
View | Download | 0.207 | a.3.1 | Cytochrome c |
View | Download | 0.202 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |