Protein: | RBG2 |
Organism: | Saccharomyces cerevisiae |
Length: | 368 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBG2.
Description | E-value | Query Range |
Subject Range |
|
6.0E-96 | [1..368] | [1..367] |
|
4.0E-94 | [1..368] | [1..363] |
|
2.0E-93 | [1..368] | [1..364] |
|
2.0E-93 | [1..368] | [1..364] |
|
2.0E-93 | [1..368] | [1..368] |
|
3.0E-93 | [1..368] | [1..364] |
Region A: Residues: [1-298] |
1 11 21 31 41 51 | | | | | | 1 MGIIDKIKAI EEEMARTQKN KATEHHLGLL KGKLARYRQQ LLADEAGSGG GGGSGFEVAK 60 61 SGDARVVLIG YPSVGKSSLL GKITTTKSEI AHYAFTTLTS VPGVLKYQGA EIQIVDLPGI 120 121 IYGASQGKGR GRQVVATART ADLVLMVLDA TKSEHQRASL EKELENVGIR LNKEKPNIYY 180 181 KKKETGGVKV TFTSPPKTNL TEQAIKMILR DYRIHNAEVL VRDDQCTIDD FIDVINEQHR 240 241 NYVKCLYVYN KIDAVSLEEV DKLAREPNTV VMSCEMDLGL QDVVEEIWYQ LNLSRVYT |
Detection Method: | |
Confidence: | 30.522879 |
Match: | 1egaA_ |
Description: | GTPase Era, N-terminal domain; GTPase Era C-terminal domain |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
GTP binding | 3.12773729841136 | bayes_pls_golite062009 |
guanyl ribonucleotide binding | 3.11992469401001 | bayes_pls_golite062009 |
guanyl nucleotide binding | 3.11160667523268 | bayes_pls_golite062009 |
binding | 2.79149251200147 | bayes_pls_golite062009 |
ribonucleotide binding | 1.3103969098333 | bayes_pls_golite062009 |
purine ribonucleotide binding | 1.31038866506213 | bayes_pls_golite062009 |
purine nucleotide binding | 1.30205192849426 | bayes_pls_golite062009 |
nucleotide binding | 1.28752914655985 | bayes_pls_golite062009 |
Region A: Residues: [299-368] |
1 11 21 31 41 51 | | | | | | 1 KKRGVRPVFD DPLVVRNNST IGDLCHGIHR DFKDKFKYAL VWGSSAKHSP QKCGLNHRID 60 61 DEDVVSLFAK |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Term | Confidence | Notes |
binding | 2.64537357529343 | bayes_pls_golite062009 |
nucleic acid binding | 2.09956015274464 | bayes_pls_golite062009 |
transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
guanyl nucleotide binding | 1.89320355239381 | bayes_pls_golite062009 |
guanyl ribonucleotide binding | 1.88721318481223 | bayes_pls_golite062009 |
GTP binding | 1.87900088157196 | bayes_pls_golite062009 |
DNA binding | 1.87765278833074 | bayes_pls_golite062009 |
GTPase activity | 1.23010905798386 | bayes_pls_golite062009 |
purine ribonucleotide binding | 1.21658213854831 | bayes_pls_golite062009 |
ribonucleotide binding | 1.21652144153182 | bayes_pls_golite062009 |
purine nucleotide binding | 1.21571071905795 | bayes_pls_golite062009 |
nucleotide binding | 1.20347573865566 | bayes_pls_golite062009 |
catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
motor activity | 0.926612891775441 | bayes_pls_golite062009 |
transcription factor activity | 0.682439846757997 | bayes_pls_golite062009 |
cytoskeletal protein binding | 0.498311726132348 | bayes_pls_golite062009 |
pyrophosphatase activity | 0.219555040684154 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides | 0.198256709027213 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.197994873032963 | bayes_pls_golite062009 |
protein binding | 0.170837278876362 | bayes_pls_golite062009 |
structural constituent of ribosome | 0.089234257580272 | bayes_pls_golite062009 |
helicase activity | 0.0775311459068899 | bayes_pls_golite062009 |