| Protein: | PCL6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 420 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCL6.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..420] | [1..420] |
|
|
8.0E-54 | [243..414] | [65..229] |
|
|
3.0E-49 | [230..407] | [4..174] |
|
|
2.0E-44 | [225..409] | [38..260] |
|
|
2.0E-43 | [189..409] | [13..245] |
|
Region A: Residues: [1-127] |
1 11 21 31 41 51
| | | | | |
1 MSIKGDSPSS TNASSSPKST YSIQSDDKAN LGSGNVDIRT DNSQQDSNNR RDIVVVTRVA 60
61 SEETLESQSS TSSMGIRPES SFNYEDASNQ ARVEMNNRVH GSNMNTINKY YPVRFPKNNE 120
121 RQLSDTN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [128-308] |
1 11 21 31 41 51
| | | | | |
1 NLNEKVQGTH TVQSSTQEDK ILDGDTSNSQ VTPSLNIAEF PTDKLLKMLT ALLTKIIKSN 60
61 DRTAATNPSL TQEIENGRCL ALSDNEKKYL SPVLGFRGKH VPQIGLDQYF QRIQKYCPTT 120
121 NDVFLSLLVY FDRISKRCNS VTTTPKTNTA KHESPSNESS LDKANRGADK MSACNSNENN 180
181 E
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.228 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.218 | N/A | N/A | a.118.8 | TPR-like |
| Term | Confidence | Notes |
| cyclin-dependent protein kinase regulator activity | 5.56043783950774 | bayes_pls_golite062009 |
| cyclin-dependent protein kinase activity | 3.56449795345173 | bayes_pls_golite062009 |
| protein kinase regulator activity | 2.42298912398512 | bayes_pls_golite062009 |
| kinase regulator activity | 2.38269740782712 | bayes_pls_golite062009 |
| binding | 2.37916921859542 | bayes_pls_golite062009 |
| transcription regulator activity | 2.35246308363499 | bayes_pls_golite062009 |
| nucleic acid binding | 1.66282585660189 | bayes_pls_golite062009 |
| DNA binding | 1.62111826122916 | bayes_pls_golite062009 |
| protein binding | 1.37207701115974 | bayes_pls_golite062009 |
| transcription factor activity | 0.942934833538458 | bayes_pls_golite062009 |
| protein kinase activity | 0.936843200737436 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.790804751794544 | bayes_pls_golite062009 |
| kinase activity | 0.76336575273867 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.681773164635831 | bayes_pls_golite062009 |
| hydrolase activity | 0.639492478283697 | bayes_pls_golite062009 |
| transcription factor binding | 0.578625558009429 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.553775750179295 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.529818399573297 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.461517963237846 | bayes_pls_golite062009 |
| kinase binding | 0.288717702650258 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.0259350481945262 | bayes_pls_golite062009 |
|
Region A: Residues: [309-420] |
1 11 21 31 41 51
| | | | | |
1 NDDSDDENTG VQRDSRAHPQ MFVMDSHNIH RLIIAGITVS TKFLSDFFYS NSRYSRVGGI 60
61 SLQELNHLEL QFLVLCDFEL LISVNELQRY ADLLYRFWNN AKAQSQALVT GM
|
| Detection Method: | |
| Confidence: | 7.39 |
| Match: | 1g3nC |
| Description: | Viral cyclin |
Matching Structure (courtesy of the PDB): |
|
