YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: GLC3
Organism: Saccharomyces cerevisiae
Length: 704 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLC3.

Description E-value Query
Range		 Subject
Range
GLGB_YEAST - 1,4-alpha-glucan-branching enzyme OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLC3 P...
GLC3 - Glycogen branching enzyme, involved in glycogen accumulation; green fluorescent protein (GFP)-fusion...
 0.0 [1..704] [1..704]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 0.0 [5..704] [162..846]
gi|5689138 - gi|5689138|dbj|BAA82828.1| starch branching enzyme rbe4 [Oryza sativa]
gi|116309426 - gi|116309426|emb|CAH66501.1| H0321H01.10 [Oryza sativa (indica cultivar-group)]
 0.0 [5..704] [156..840]
gi|15553091 - gi|15553091|dbj|BAB64912.1| starch branching enzyme II [Ipomoea batatas]
 0.0 [5..704] [174..858]
gi|4584511 - gi|4584511|emb|CAB40747.1| starch branching enzyme II [Solanum tuberosum]
 0.0 [5..704] [129..813]
gi|11037534 - gi|11037534|gb|AAG27623.1|AF286319_1 starch branching enzyme 2 [Triticum aestivum]
 0.0 [5..704] [139..823]

Back

Predicted Domain #1
Region A:
Residues: [1-147] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNIPDNVKG AVEFDPWLKP FADVLSERRY LADKWLYDIT HATPDGSYQS LSKFARDSYK  60
   61 SYGLHANPET KEITYKEWAP NAERAFLVGD FNNWDTTSHE LKNKDEFGNF TITLHPLPNG 120
  121 DFAIPHDSKI KVMFILPDGS KIFRLPA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 206.522879
Match: 1eh9A_
Description: Glycosyltrehalose trehalohydrolase, N-terminal domain N; Glycosyltrehalose trehalohydrolase; Glycosyltrehalose trehalohydrolase, central domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity, acting on glycosyl bonds 3.87554479203059 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 3.47174391073813 bayes_pls_golite062009
catalytic activity 1.85569074294201 bayes_pls_golite062009
phosphorylase activity 0.99159540154441 bayes_pls_golite062009
glucosidase activity 0.766503513427695 bayes_pls_golite062009
hexosaminidase activity 0.763360027922833 bayes_pls_golite062009
cation transmembrane transporter activity 0.687079660016821 bayes_pls_golite062009
sugar binding 0.52048704356718 bayes_pls_golite062009
chitinase activity 0.500233744020165 bayes_pls_golite062009
ion transmembrane transporter activity 0.498330151821515 bayes_pls_golite062009
binding 0.391406996198514 bayes_pls_golite062009
carbohydrate binding 0.31275257729319 bayes_pls_golite062009
transferase activity, transferring hexosyl groups 0.266938437560648 bayes_pls_golite062009
beta-N-acetylhexosaminidase activity 0.263065978664289 bayes_pls_golite062009
hydrolase activity 0.15436539680525 bayes_pls_golite062009
ligand-gated ion channel activity 0.0325030313870961 bayes_pls_golite062009
ligand-gated channel activity 0.0325030313870961 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [148-439] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WITRATQPSK ETSKQFGPAY EGRFWNPENP YKFVHPRPKF SESVDSLRIY EAHVGISSPE  60
   61 PKITTYKEFT EKVLPRIKYL GYDAIQLMAI MEHAYYASFG YQVTNFFAAS SRFGTPEELK 120
  121 ELIDTAHSMG ILVLLDVVHS HASKNVEDGL NMFDGSDHQY FHSISSGRGE HPLWDSRLFN 180
  181 YGKFEVQRFL LANLAFYVDV YQFDGFRFDG VTSMLYVHHG VGAGGSFSGD YNEYLSRDRS 240
  241 FVDHEALAYL MLANDLVHEM LPNLAVTVAE DVSGYPTLCL PRSIGGTGFD YR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 206.522879
Match: 1eh9A_
Description: Glycosyltrehalose trehalohydrolase, N-terminal domain N; Glycosyltrehalose trehalohydrolase; Glycosyltrehalose trehalohydrolase, central domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [440-628] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAMALPDMWI KLIKEKKDDE WEMGSIVYTL TNRRYGEKVV AYCESHDQAL VGDKTLAFWL  60
   61 MDAAMYTDMT VLKEPSIVID RGIALHKMIR LITHSLGGEA YLNFEGNEFG HPEWLDFPNV 120
  121 NNGDSYKYAR RQFNLADDPL LRYQNLNEFD RSMQLCEKRH KWLNTKQAYV SLKHEGDKMI 180
  181 VFERNNLLF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 206.522879
Match: 1eh9A_
Description: Glycosyltrehalose trehalohydrolase, N-terminal domain N; Glycosyltrehalose trehalohydrolase; Glycosyltrehalose trehalohydrolase, central domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [629-704] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IFNFHPTNSY SDYRVGVEKA GTYHIVLNSD RAEFGGHNRI NESSEFFTTD LEWNNRKNFL  60
   61 QVYIPSRVAL VLALKE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 100.751666
Match: 1pamA_
Description: Cyclomaltodextrin glycanotransferase, domain D; Cyclodextrin glycosyltransferase, C-terminal domain; Cyclodextrin glycosyltransferase
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle