| Protein: | RKM2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 479 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RKM2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..479] | [1..479] |
|
|
3.0E-84 | [42..472] | [43..450] |
|
|
3.0E-84 | [52..472] | [45..441] |
|
|
3.0E-84 | [25..473] | [38..478] |
|
|
2.0E-83 | [37..472] | [39..449] |
|
|
7.0E-81 | [37..472] | [35..446] |
|
|
3.0E-79 | [8..479] | [36..434] |
|
Region A: Residues: [1-357] |
1 11 21 31 41 51
| | | | | |
1 MEGKVDVLLT WLKKSDKFYI APNISICESP ETGRGIVLSH GSIRKNDIIV SVPSSKQLNF 60
61 HTILYHISKF NKELNIPGIT IDRKPINYED NIIEAENKAW ADPRYGLYSE LSKEFLLSLS 120
121 SFQLVSFYIL VENFLLPKWT HNEIYSDWKP FFDVWPSMEE LRSIPAIWNC DPNSRYHSLI 180
181 EYLPAASRKH MARISGLVRE DWETISEVVL KWNEIYGSLS CTKNSDKFTS DELFSLFVHV 240
241 YFIINSRCLY AKIPLKIEDS PSNFTLVPYV DFMNHICESD LHCYPQLSPQ LRSEGENIIG 300
301 IGQFTIRCGD HLYDNINEEL FLNYGAHSND FLLNEYGFVV DGNKWNYLDI SDEIIEL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| protein methyltransferase activity | 5.17416737778891 | bayes_pls_golite062009 |
| histone methyltransferase activity | 5.11922117538134 | bayes_pls_golite062009 |
| lysine N-methyltransferase activity | 4.38975149400874 | bayes_pls_golite062009 |
| protein-lysine N-methyltransferase activity | 4.38975149400874 | bayes_pls_golite062009 |
| histone-lysine N-methyltransferase activity | 4.38975149400874 | bayes_pls_golite062009 |
| N-methyltransferase activity | 2.95997850922356 | bayes_pls_golite062009 |
| histone methyltransferase activity (H3-K9 specific) | 2.79558337306904 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 2.69428385009711 | bayes_pls_golite062009 |
| methyltransferase activity | 2.33114816345072 | bayes_pls_golite062009 |
| transferase activity, transferring one-carbon groups | 2.25175257044903 | bayes_pls_golite062009 |
| protein binding | 0.819746654455251 | bayes_pls_golite062009 |
| binding | 0.773331253307132 | bayes_pls_golite062009 |
| transferase activity | 0.653108419761009 | bayes_pls_golite062009 |
| catalytic activity | 0.414641636618101 | bayes_pls_golite062009 |
|
Region A: Residues: [358-479] |
1 11 21 31 41 51
| | | | | |
1 IDDDKKEVKT FLLEHDYWGD YTINETDISY RIFVALNYYV TRDERRVRKF IEGYISEDYF 60
61 KPKISSVLKE LLVSLTAKYT KTLSELTEKV SNLENNLCLQ NLITIYKGYI KILTQHLQDL 120
121 QS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.938 | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.931 | a.47.2 | t-snare proteins |
| View | Download | 0.928 | a.7.7 | BAG domain |
| View | Download | 0.926 | a.7.8 | GAT domain |
| View | Download | 0.871 | a.7.4 | Smac/diablo |
| View | Download | 0.825 | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.813 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.809 | a.47.2 | t-snare proteins |
| View | Download | 0.724 | a.25.1 | Ferritin-like |
| View | Download | 0.723 | a.7.1 | Spectrin repeat |
| View | Download | 0.715 | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.691 | a.24.3 | Cytochromes |
| View | Download | 0.641 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.639 | a.7.1 | Spectrin repeat |
| View | Download | 0.620 | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.591 | a.25.1 | Ferritin-like |
| View | Download | 0.586 | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.585 | a.24.1 | Apolipoprotein |
| View | Download | 0.582 | a.25.1 | Ferritin-like |
| View | Download | 0.580 | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.573 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.556 | a.25.1 | Ferritin-like |
| View | Download | 0.543 | a.47.2 | t-snare proteins |
| View | Download | 0.537 | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.530 | a.24.3 | Cytochromes |
| View | Download | 0.521 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.516 | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
| View | Download | 0.515 | a.24.3 | Cytochromes |
| View | Download | 0.511 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.506 | a.46.1 | Methionine synthase domain |
| View | Download | 0.493 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.483 | f.25.1 | Cytochrome c oxidase subunit III-like |
| View | Download | 0.483 | a.63.1 | Apolipophorin-III |
| View | Download | 0.476 | a.25.1 | Ferritin-like |
| View | Download | 0.457 | a.25.1 | Ferritin-like |
| View | Download | 0.445 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.444 | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
| View | Download | 0.438 | a.24.3 | Cytochromes |
| View | Download | 0.421 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.402 | a.4.12 | TrpR-like |
| View | Download | 0.389 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.388 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.386 | a.62.1 | Hepatitis B viral capsid (hbcag) |
| View | Download | 0.378 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.372 | d.188.1 | Prokaryotic ribosomal protein L17 |
| View | Download | 0.372 | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.368 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.367 | a.29.2 | Bromodomain |
| View | Download | 0.360 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.345 | d.13.1 | HIT-like |
| View | Download | 0.338 | a.118.10 | Phosphoinositide-binding clathrin adaptor, N-terminal domain |
| View | Download | 0.338 | c.110.1 | D-Tyr tRNAtyr deacylase, DTD |
| View | Download | 0.333 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.332 | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.327 | a.118.7 | 14-3-3 protein |
| View | Download | 0.327 | a.24.4 | Hemerythrin |
| View | Download | 0.324 | a.4.1 | Homeodomain-like |
| View | Download | 0.318 | a.48.2 | Transferrin receptor ectodomain, C-terminal domain |
| View | Download | 0.313 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.304 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.301 | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.295 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.295 | a.22.1 | Histone-fold |
| View | Download | 0.294 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.293 | d.110.4 | SNARE-like |
| View | Download | 0.289 | a.63.1 | Apolipophorin-III |
| View | Download | 0.289 | a.118.8 | TPR-like |
| View | Download | 0.283 | a.19.1 | Fertilization protein |
| View | Download | 0.282 | d.13.1 | HIT-like |
| View | Download | 0.278 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.277 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.276 | a.29.2 | Bromodomain |
| View | Download | 0.274 | d.74.3 | RBP11-like subunits of RNA polymerase |
| View | Download | 0.272 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.264 | a.2.7 | tRNA-binding arm |
| View | Download | 0.264 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.262 | a.24.2 | Aspartate receptor, ligand-binding domain |
| View | Download | 0.262 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.260 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.254 | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.254 | d.58.27 | Translational regulator protein regA |
| View | Download | 0.254 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.252 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.251 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.245 | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
| View | Download | 0.244 | a.26.1 | 4-helical cytokines |
| View | Download | 0.243 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.241 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.241 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.238 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.237 | a.26.1 | 4-helical cytokines |
| View | Download | 0.234 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.232 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.226 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.225 | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.224 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.220 | d.74.5 | Hypothetical protein Yml108w |
| View | Download | 0.218 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.216 | d.228.1 | Replication modulator SeqA, C-terminal DNA-binding domain |
| View | Download | 0.210 | a.128.1 | Terpenoid synthases |
| View | Download | 0.209 | a.1.1 | Globin-like |
| View | Download | 0.208 | a.1.1 | Globin-like |
| View | Download | 0.207 | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
| View | Download | 0.207 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.204 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.203 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.203 | a.71.2 | Helical domain of Sec23/24 |
